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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
108900-108990
(-)
glycine
107314-108592 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
BCG_0101c
Operon
DOOR ID:
260297
BCG_0100c
(sdaA)
,
BCG_0101c
(glyA)
View Structure
2
337716-337889
(-)
cobalamin
335907-337578 (-)
PPE2
PPE family protein
BCG_0294c
Operon
DOOR ID:
260337
BCG_0292c
(cobU)
,
BCG_0293c
(cobQ1)
,
BCG_0294c
(PPE2)
View Structure
3
531862-531972
(+)
TPP
532981-533188 (+)
thiS
Possible protein thiS
BCG_0455
Operon
DOOR ID:
260370
BCG_0454
(thiO)
,
BCG_0455
(thiS)
,
BCG_0456
(thiG)
View Structure
4
541031-541141
(-)
TPP
538572-539370 (-)
thiD
Probable phosphomethylpyrimidine kinase thiD
BCG_0461c
Operon
DOOR ID:
260371
BCG_0460c,
BCG_0461c
(thiD)
,
BCG_0462c
(thiC)
View Structure
5
995996-996218
(-)
ydaO-yuaA
994762-995986 (-)
rpfA
Possible resuscitation-promoting factor rpfA
BCG_0919c
Single gene
DOOR ID:
1948521
BCG_0919c
(rpfA)
View Structure
6
1292894-1293112
(-)
cobalamin
1290481-1292761 (-)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
BCG_1194c
Single gene
DOOR ID:
1948630
BCG_1194c
(metE)
View Structure
7
1747850-1748019
(+)
ykoK
1748316-1748553 (+)
BCG_1587
BCG_1587
Single gene
DOOR ID:
1948777
BCG_1587
View Structure
8
2048597-2048771
(+)
ykoK
2049073-2049373 (+)
PE20
PE family protein
BCG_1839
Operon
DOOR ID:
260682
BCG_1839
(PE20)
,
BCG_1840
(PPE31)
View Structure
9
2076568-2076665
(+)
glycine
2076831-2079657 (+)
gcvB
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
BCG_1867
Operon
DOOR ID:
260687
BCG_1865,
BCG_1866,
BCG_1867
(gcvB)
View Structure
10
3717255-3717374
(+)
SAM-IV
3717410-3718760 (+)
metC
Probable O-acetylhomoserine sulfhydrylase metC (9)
BCG_3410
Operon
DOOR ID:
261038
BCG_3410
(metC)
,
BCG_3411
(metX)
,
BCG_3412
View Structure
Genome:
Mycobacterium bovis BCG str. Pasteur 1173P2
(
NC_008769.1
);
Phylum:
Actinobacteria
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Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"108900-108990";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"107314-108592";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"BCG_0101c";i:14;s:6:"Operon";i:15;s:6:"260297";i:16;s:31:"BCG_0100c(sdaA);BCG_0101c(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008769.1";i:2;s:44:"Mycobacterium bovis BCG str. Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"337716-337889";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"335907-337578";i:10;s:1:"-";i:11;s:4:"PPE2";i:12;s:18:"PPE family protein";i:13;s:9:"BCG_0294c";i:14;s:6:"Operon";i:15;s:6:"260337";i:16;s:48:"BCG_0292c(cobU);BCG_0293c(cobQ1);BCG_0294c(PPE2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008769.1";i:2;s:44:"Mycobacterium bovis BCG str. Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"531862-531972";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"532981-533188";i:10;s:1:"+";i:11;s:4:"thiS";i:12;s:21:"Possible protein thiS";i:13;s:8:"BCG_0455";i:14;s:6:"Operon";i:15;s:6:"260370";i:16;s:44:"BCG_0454(thiO);BCG_0455(thiS);BCG_0456(thiG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008769.1";i:2;s:44:"Mycobacterium bovis BCG str. Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"541031-541141";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"538572-539370";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:45:"Probable phosphomethylpyrimidine kinase thiD ";i:13;s:9:"BCG_0461c";i:14;s:6:"Operon";i:15;s:6:"260371";i:16;s:41:"BCG_0460c;BCG_0461c(thiD);BCG_0462c(thiC)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008769.1";i:2;s:44:"Mycobacterium bovis BCG str. Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"995996-996218";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"994762-995986";i:10;s:1:"-";i:11;s:4:"rpfA";i:12;s:44:"Possible resuscitation-promoting factor rpfA";i:13;s:9:"BCG_0919c";i:14;s:11:"Single gene";i:15;s:7:"1948521";i:16;s:15:"BCG_0919c(rpfA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008769.1";i:2;s:44:"Mycobacterium bovis BCG str. Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1292894-1293112";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1290481-1292761";i:10;s:1:"-";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"BCG_1194c";i:14;s:11:"Single gene";i:15;s:7:"1948630";i:16;s:15:"BCG_1194c(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008769.1";i:2;s:44:"Mycobacterium bovis BCG str. Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1747850-1748019";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1748316-1748553";i:10;s:1:"+";i:11;s:8:"BCG_1587";i:12;s:0:"";i:13;s:8:"BCG_1587";i:14;s:11:"Single gene";i:15;s:7:"1948777";i:16;s:8:"BCG_1587";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008769.1";i:2;s:44:"Mycobacterium bovis BCG str. Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2048597-2048771";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2049073-2049373";i:10;s:1:"+";i:11;s:4:"PE20";i:12;s:17:"PE family protein";i:13;s:8:"BCG_1839";i:14;s:6:"Operon";i:15;s:6:"260682";i:16;s:30:"BCG_1839(PE20);BCG_1840(PPE31)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008769.1";i:2;s:44:"Mycobacterium bovis BCG str. Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2076568-2076665";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2076831-2079657";i:10;s:1:"+";i:11;s:4:"gcvB";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:8:"BCG_1867";i:14;s:6:"Operon";i:15;s:6:"260687";i:16;s:32:"BCG_1865;BCG_1866;BCG_1867(gcvB)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008769.1";i:2;s:44:"Mycobacterium bovis BCG str. Pasteur 1173P2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3717255-3717374";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3717410-3718760";i:10;s:1:"+";i:11;s:4:"metC";i:12;s:50:"Probable O-acetylhomoserine sulfhydrylase metC (9)";i:13;s:8:"BCG_3410";i:14;s:6:"Operon";i:15;s:6:"261038";i:16;s:38:"BCG_3410(metC);BCG_3411(metX);BCG_3412";i:17;s:0:"";i:18;s:15:"View Structure ";}}
