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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
393414-393586
(+)
yybP-ykoY
393594-394170 (+)
azo0370
Conserved hypothetical membrane protein
azo0370
Single gene
DOOR ID:
1932851
azo0370
View Structure
2
619277-619340
(-)
SAH
617789-619199 (-)
acyH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
azo0587
Single gene
DOOR ID:
1932905
azo0587
(acyH)
View Structure
3
904016-904117
(-)
TPP
901162-903079 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
azo0840
Operon
DOOR ID:
251288
azo0840
(thiC)
,
azo0841
(thiD1)
View Structure
4
1073486-1073532
(+)
mini-ykkC
1073555-1073876 (+)
sugE
BMASAVP1_A1090
Single gene
DOOR ID:
1954978
BMASAVP1_A1090
(sugE)
View Structure
5
1204222-1204323
(-)
glycine
1203340-1203955 (-)
azo1116
Conserved hypothetical membrane protein
azo1116
Operon
DOOR ID:
251353
azo1115
(parE)
,
azo1116
View Structure
6
1391369-1391462
(-)
glycine
1390114-1391206 (-)
gcvT
Glycine cleavage system T protein (0)
azo1287
Operon
DOOR ID:
251396
azo1285
(gcvP)
,
azo1286
(gcvH)
,
azo1287
(gcvT)
View Structure
7
2635166-2635365
(+)
cobalamin
2635526-2637713 (+)
azo2396
Putative TonB-dependent receptor
azo2396
Single gene
DOOR ID:
1933374
azo2396
View Structure
8
3873006-3873225
(+)
cobalamin
3873422-3874049 (+)
azo3528
Conserved hypothetical membrane protein
azo3528
Operon
DOOR ID:
251885
azo3528,
azo3529,
azo3530
(cbiX)
,
azo3531
(cbiC)
,
azo3532
(cbiD)
,
azo3533
(cbiE)
,
azo3534
(cbiL)
View Structure
9
3903207-3903431
(-)
cobalamin
3901149-3903090 (-)
azo3556
Putative TonB-dependent receptor
azo3556
Single gene
DOOR ID:
1933732
azo3556
View Structure
10
4083321-4083393
(-)
SAH
4079533-4083235 (-)
metH
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
azo3726
Single gene
DOOR ID:
1933790
azo3726
(metH)
View Structure
Genome:
Azoarcus sp. BH72
(
NC_008702.1
);
Phylum:
Betaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"393414-393586";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"393594-394170";i:10;s:1:"+";i:11;s:7:"azo0370";i:12;s:39:"Conserved hypothetical membrane protein";i:13;s:7:"azo0370";i:14;s:11:"Single gene";i:15;s:7:"1932851";i:16;s:7:"azo0370";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"619277-619340";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"617789-619199";i:10;s:1:"-";i:11;s:4:"acyH";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:7:"azo0587";i:14;s:11:"Single gene";i:15;s:7:"1932905";i:16;s:13:"azo0587(acyH)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"904016-904117";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"901162-903079";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"azo0840";i:14;s:6:"Operon";i:15;s:6:"251288";i:16;s:28:"azo0840(thiC);azo0841(thiD1)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1073486-1073532";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1073555-1073876";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:14:"BMASAVP1_A1090";i:14;s:11:"Single gene";i:15;s:7:"1954978";i:16;s:20:"BMASAVP1_A1090(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1204222-1204323";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1203340-1203955";i:10;s:1:"-";i:11;s:7:"azo1116";i:12;s:39:"Conserved hypothetical membrane protein";i:13;s:7:"azo1116";i:14;s:6:"Operon";i:15;s:6:"251353";i:16;s:21:"azo1115(parE);azo1116";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1391369-1391462";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1390114-1391206";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:37:"Glycine cleavage system T protein (0)";i:13;s:7:"azo1287";i:14;s:6:"Operon";i:15;s:6:"251396";i:16;s:41:"azo1285(gcvP);azo1286(gcvH);azo1287(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2635166-2635365";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2635526-2637713";i:10;s:1:"+";i:11;s:7:"azo2396";i:12;s:32:"Putative TonB-dependent receptor";i:13;s:7:"azo2396";i:14;s:11:"Single gene";i:15;s:7:"1933374";i:16;s:7:"azo2396";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3873006-3873225";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3873422-3874049";i:10;s:1:"+";i:11;s:7:"azo3528";i:12;s:39:"Conserved hypothetical membrane protein";i:13;s:7:"azo3528";i:14;s:6:"Operon";i:15;s:6:"251885";i:16;s:85:"azo3528;azo3529;azo3530(cbiX);azo3531(cbiC);azo3532(cbiD);azo3533(cbiE);azo3534(cbiL)";i:17;s:43:"transition metal ion transport [GO:0000041]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3903207-3903431";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3901149-3903090";i:10;s:1:"-";i:11;s:7:"azo3556";i:12;s:32:"Putative TonB-dependent receptor";i:13;s:7:"azo3556";i:14;s:11:"Single gene";i:15;s:7:"1933732";i:16;s:7:"azo3556";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008702.1";i:2;s:18:"Azoarcus sp. BH72 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4083321-4083393";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4079533-4083235";i:10;s:1:"-";i:11;s:4:"metH";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:7:"azo3726";i:14;s:11:"Single gene";i:15;s:7:"1933790";i:16;s:13:"azo3726(metH)";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}}
