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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
81083-81260
(+)
cobalamin
81311-83147 (+)
AHA_0074
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
AHA_0074
Single gene
DOOR ID:
1907096
AHA_0074
View Structure
2
468097-468210
(+)
TPP
468493-470485 (+)
AHA_0439
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
AHA_0439
Operon
DOOR ID:
237464
AHA_0439,
AHA_0440,
AHA_0441
(thiF)
,
AHA_0442
(thiS)
,
AHA_0443
(thiG)
,
AHA_0444
(thiH)
View Structure
3
472003-472159
(+)
ydaO-yuaA
472160-472919 (+)
thiF
Thiazole biosynthesis adenylyltransferase ThiF
AHA_0441
Operon
DOOR ID:
237464
AHA_0439,
AHA_0440,
AHA_0441
(thiF)
,
AHA_0442
(thiS)
,
AHA_0443
(thiG)
,
AHA_0444
(thiH)
View Structure
4
551596-551681
(-)
c-di-GMP-I
551178-551550 (-)
AHA_0518
Putative fimbrial protein
AHA_0518
single gene
DOOR ID:
1906346
AHA_0518
View Structure
5
649328-649413
(-)
c-di-GMP-I
647840-649325 (-)
AHA_0610
Chitin binding protein
AHA_0610
single gene
DOOR ID:
1906072
AHA_0610
View Structure
6
947228-947318
(-)
TPP
946195-947176 (-)
thiB
Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein
AHA_0876
Operon
DOOR ID:
237545
AHA_0874
(thiQ)
,
AHA_0875
(thiP)
,
AHA_0876
(thiB)
View Structure
7
1055622-1055709
(+)
c-di-GMP-I
1055819-1058429 (+)
AHA_0977
Chitinase A
AHA_0977
single gene
DOOR ID:
1907010
AHA_0977
View Structure
8
1379556-1379635
(+)
glycine
1379858-1381235 (+)
agcS-1
Amino acid carrier protein
AHA_1271
Single gene
DOOR ID:
1907067
AHA_1271
(agcS-1)
View Structure
9
1379641-1379751
(+)
glycine
1379858-1381235 (+)
agcS-1
Amino acid carrier protein
AHA_1271
Single gene
DOOR ID:
1907067
AHA_1271
(agcS-1)
View Structure
10
1424492-1424649
(+)
FMN
1424751-1425405 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
AHA_1311
Single gene
DOOR ID:
1905419
AHA_1311
(ribB)
View Structure
11
1732669-1732808
(+)
MOCO
1734040-1734550 (+)
napF
Ferredoxin-type protein NapF
AHA_1584
Operon
DOOR ID:
237674
AHA_1584
(napF)
,
AHA_1585
(napD)
View Structure
12
1984541-1984712
(+)
lysine
1984798-1986379 (+)
AHA_1821
Na+/H+ antiporter family
AHA_1821
Single gene
DOOR ID:
1906561
AHA_1821
View Structure
13
2861134-2861358
(+)
lysine
2861447-2862800 (+)
AHA_2570
Aspartokinase
AHA_2570
Single gene
DOOR ID:
1907113
AHA_2570
View Structure
14
3083644-3083758
(+)
yybP-ykoY
3083849-3084407 (+)
AHA_2746
Integral membrane protein
AHA_2746
Operon
DOOR ID:
237893
AHA_2746,
AHA_2747,
AHA_2748,
AHA_2749
View Structure
15
3183247-3183416
(-)
ykoK
3181782-3183126 (-)
mgtE-1
Magnesium transporter MgtE
AHA_2831
Single gene
DOOR ID:
1907147
AHA_2831
(mgtE-1)
View Structure
16
3873053-3873138
(-)
c-di-GMP-I
3869901-3872904 (-)
AHA_3440
Chitodextrinase
AHA_3440
single gene
DOOR ID:
1906680
AHA_3440
View Structure
17
4051489-4051540
(-)
mini-ykkC
4050941-4051349 (-)
azo3690
azo3690
Single gene
DOOR ID:
1933768
azo3690
View Structure
18
4255284-4255390
(-)
yybP-ykoY
4253058-4254117 (+)
AHA_3828
L-asparaginase; type II
AHA_3828
Single gene
DOOR ID:
1906039
AHA_3828
View Structure
Genome:
Aeromonas hydrophila subsp. hydrophila ATCC 7966
(
NC_008570.1
);
Phylum:
Gammaproteobacteria
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"81083-81260";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:11:"81311-83147";i:10;s:1:"+";i:11;s:8:"AHA_0074";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:8:"AHA_0074";i:14;s:11:"Single gene";i:15;s:7:"1907096";i:16;s:8:"AHA_0074";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"468097-468210";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"468493-470485";i:10;s:1:"+";i:11;s:8:"AHA_0439";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"AHA_0439";i:14;s:6:"Operon";i:15;s:6:"237464";i:16;s:77:"AHA_0439;AHA_0440;AHA_0441(thiF);AHA_0442(thiS);AHA_0443(thiG);AHA_0444(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"472003-472159";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"472160-472919";i:10;s:1:"+";i:11;s:4:"thiF";i:12;s:46:"Thiazole biosynthesis adenylyltransferase ThiF";i:13;s:8:"AHA_0441";i:14;s:6:"Operon";i:15;s:6:"237464";i:16;s:77:"AHA_0439;AHA_0440;AHA_0441(thiF);AHA_0442(thiS);AHA_0443(thiG);AHA_0444(thiH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"551596-551681";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"551178-551550";i:10;s:1:"-";i:11;s:8:"AHA_0518";i:12;s:25:"Putative fimbrial protein";i:13;s:8:"AHA_0518";i:14;s:11:"single gene";i:15;s:7:"1906346";i:16;s:8:"AHA_0518";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"649328-649413";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"647840-649325";i:10;s:1:"-";i:11;s:8:"AHA_0610";i:12;s:22:"Chitin binding protein";i:13;s:8:"AHA_0610";i:14;s:11:"single gene";i:15;s:7:"1906072";i:16;s:8:"AHA_0610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"947228-947318";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"946195-947176";i:10;s:1:"-";i:11;s:4:"thiB";i:12;s:103:"Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein";i:13;s:8:"AHA_0876";i:14;s:6:"Operon";i:15;s:6:"237545";i:16;s:44:"AHA_0874(thiQ);AHA_0875(thiP);AHA_0876(thiB)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1055622-1055709";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1055819-1058429";i:10;s:1:"+";i:11;s:8:"AHA_0977";i:12;s:12:"Chitinase A ";i:13;s:8:"AHA_0977";i:14;s:11:"single gene";i:15;s:7:"1907010";i:16;s:8:"AHA_0977";i:17;s:82:"carbohydrate metabolic process [GO:0005975]; chitin catabolic process [GO:0006032]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1379556-1379635";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1379858-1381235";i:10;s:1:"+";i:11;s:6:"agcS-1";i:12;s:26:"Amino acid carrier protein";i:13;s:8:"AHA_1271";i:14;s:11:"Single gene";i:15;s:7:"1907067";i:16;s:16:"AHA_1271(agcS-1)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1379641-1379751";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1379858-1381235";i:10;s:1:"+";i:11;s:6:"agcS-1";i:12;s:26:"Amino acid carrier protein";i:13;s:8:"AHA_1271";i:14;s:11:"Single gene";i:15;s:7:"1907067";i:16;s:16:"AHA_1271(agcS-1)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1424492-1424649";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1424751-1425405";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"AHA_1311";i:14;s:11:"Single gene";i:15;s:7:"1905419";i:16;s:14:"AHA_1311(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1732669-1732808";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1734040-1734550";i:10;s:1:"+";i:11;s:4:"napF";i:12;s:28:"Ferredoxin-type protein NapF";i:13;s:8:"AHA_1584";i:14;s:6:"Operon";i:15;s:6:"237674";i:16;s:29:"AHA_1584(napF);AHA_1585(napD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1984541-1984712";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1984798-1986379";i:10;s:1:"+";i:11;s:8:"AHA_1821";i:12;s:24:"Na+/H+ antiporter family";i:13;s:8:"AHA_1821";i:14;s:11:"Single gene";i:15;s:7:"1906561";i:16;s:8:"AHA_1821";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2861134-2861358";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2861447-2862800";i:10;s:1:"+";i:11;s:8:"AHA_2570";i:12;s:14:"Aspartokinase ";i:13;s:8:"AHA_2570";i:14;s:11:"Single gene";i:15;s:7:"1907113";i:16;s:8:"AHA_2570";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3083644-3083758";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3083849-3084407";i:10;s:1:"+";i:11;s:8:"AHA_2746";i:12;s:25:"Integral membrane protein";i:13;s:8:"AHA_2746";i:14;s:6:"Operon";i:15;s:6:"237893";i:16;s:35:"AHA_2746;AHA_2747;AHA_2748;AHA_2749";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3183247-3183416";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"3181782-3183126";i:10;s:1:"-";i:11;s:6:"mgtE-1";i:12;s:26:"Magnesium transporter MgtE";i:13;s:8:"AHA_2831";i:14;s:11:"Single gene";i:15;s:7:"1907147";i:16;s:16:"AHA_2831(mgtE-1)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3873053-3873138";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3869901-3872904";i:10;s:1:"-";i:11;s:8:"AHA_3440";i:12;s:16:"Chitodextrinase ";i:13;s:8:"AHA_3440";i:14;s:11:"single gene";i:15;s:7:"1906680";i:16;s:8:"AHA_3440";i:17;s:43:"carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4051489-4051540";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4050941-4051349";i:10;s:1:"-";i:11;s:7:"azo3690";i:12;s:0:"";i:13;s:7:"azo3690";i:14;s:11:"Single gene";i:15;s:7:"1933768";i:16;s:7:"azo3690";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_008570.1";i:2;s:49:"Aeromonas hydrophila subsp. hydrophila ATCC 7966 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4255284-4255390";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4253058-4254117";i:10;s:1:"+";i:11;s:8:"AHA_3828";i:12;s:24:"L-asparaginase; type II ";i:13;s:8:"AHA_3828";i:14;s:11:"Single gene";i:15;s:7:"1906039";i:16;s:8:"AHA_3828";i:17;s:41:"asparagine metabolic process [GO:0006528]";i:18;s:15:"View Structure ";}}
