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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
82070-82214
(+)
FMN
82322-82961 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
HS_0089
Single gene
DOOR ID:
1850954
HS_0089
(ribB)
View Structure
2
85627-85726
(-)
TPP
84587-85388 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
HS_0092
Operon
DOOR ID:
212756
HS_0090
(thiE)
,
HS_0091
(thiD)
,
HS_0092
(thiM)
View Structure
3
491497-491613
(+)
glycine
491710-493087 (+)
HS_0461
D-alanine glycine permease
HS_0461
Single gene
DOOR ID:
1851064
HS_0461
View Structure
4
843556-843727
(+)
lysine
843814-845362 (+)
HS_0788
Transporter; NhaC family
HS_0788
Single gene
DOOR ID:
1851169
HS_0788
View Structure
5
881033-881170
(-)
MOCO
878466-880872 (-)
torZ
Trimethylamine-N-oxide reductase 2; biotin sulfoxide reductase
HS_0806
Single gene
DOOR ID:
1851177
HS_0806
(torZ)
View Structure
6
1117814-1117904
(-)
TPP
1116732-1117749 (-)
tbpA
Thiamine ABC transporter; periplasmic-binding protein
HS_1013
Operon
DOOR ID:
212953
HS_1010
(bioB)
,
HS_1011
(thiQ)
,
HS_1012
(thiP)
,
HS_1013
(tbpA)
View Structure
7
1138560-1138694
(-)
MOCO
1137068-1137545 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
HS_1030
Operon
DOOR ID:
212960
HS_1028
(moaE)
,
HS_1029
(moaD)
,
HS_1030
(moaC)
,
HS_1031
(moaA)
View Structure
Genome:
Haemophilus somnus 129PT
(
NC_008309.1
);
Phylum:
Gammaproteobacteria
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