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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
114598-114731
(+)
MOCO
115799-116279 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
Sden_0102
Operon
DOOR ID:
185630
Sden_0101
(moaA)
,
Sden_0102
(moaC)
,
Sden_0103,
Sden_0104,
Sden_0105,
Sden_0106,
Sden_0107
View Structure
2
784742-784874
(-)
yybP-ykoY
784104-784659 (-)
Sden_0682
Sden_0682
Single gene
DOOR ID:
1791122
Sden_0682
View Structure
3
842778-842933
(+)
cobalamin
843046-845017 (+)
Sden_0729
TonB-dependent receptor; plug
Sden_0729
Single gene
DOOR ID:
1791149
Sden_0729
View Structure
4
2091848-2091948
(+)
TPP
2092232-2094293 (+)
Sden_1770
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Sden_1770
Operon
DOOR ID:
185939
Sden_1770,
Sden_1771,
Sden_1772,
Sden_1773,
Sden_1774
(thiG)
,
Sden_1775
(thiH)
View Structure
5
2534228-2534317
(+)
c-di-GMP-I
2534422-2537032 (+)
Sden_2136
Chitinase. Glycosyl Hydrolase family 18
Sden_2136
single gene
DOOR ID:
1791854
Sden_2136
View Structure
6
2747485-2747594
(-)
TPP
2745196-2747431 (-)
Sden_2321
TonB-dependent receptor
Sden_2321
Operon
DOOR ID:
186021
Sden_2318,
Sden_2319,
Sden_2320,
Sden_2321
View Structure
7
3036119-3036316
(-)
lysine
3034480-3036055 (-)
Sden_2537
Na+/H+ antiporter NhaC
Sden_2537
Single gene
DOOR ID:
1792076
Sden_2537
View Structure
8
3570573-3570742
(-)
lysine
3569044-3570394 (-)
Sden_2982
Aspartokinase
Sden_2982
Single gene
DOOR ID:
1792307
Sden_2982
View Structure
Genome:
Shewanella denitrificans OS217
(
NC_007954.1
);
Phylum:
Gammaproteobacteria
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