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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1075963-1076120
(+)
FMN
1076237-1077287 (+)
GOX0978
Bifunctional riboflavin biosynthesis protein RibD (6)
GOX0978
Operon
DOOR ID:
122983
GOX0978,
GOX0979,
GOX0980,
GOX0981
View Structure
2
1111665-1111874
(-)
cobalamin
1109560-1111522 (-)
GOX1015
TonB-dependent receptor of ferrichrome transport system
GOX1015
Operon
DOOR ID:
122990
GOX1013,
GOX1014,
GOX1015
View Structure
3
1200182-1200271
(+)
glycine
1200409-1201561 (+)
GOX1095
Aminomethyltransferase (Glycine cleavage system T protein) (0)
GOX1095
Operon
DOOR ID:
123009
GOX1095,
GOX1096
View Structure
4
1475497-1475626
(-)
TPP
1472920-1475404 (-)
GOX1347
TonB-dependent outer membrane receptor
GOX1347
Operon
DOOR ID:
123057
GOX1345,
GOX1346,
GOX1347
View Structure
5
1829537-1829616
(-)
sam-alpha
1828270-1829464 (-)
GOX1671
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
GOX1671
Operon
DOOR ID:
123123
GOX1669,
GOX1670
(apaG)
,
GOX1671
View Structure
6
2355903-2355981
(+)
fluoride
2356016-2357357 (+)
GOX2145
GOX2145
Single gene
DOOR ID:
1652984
GOX2145
View Structure
7
2443327-2443461
(+)
TPP
2443596-2445390 (+)
GOX2225
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
GOX2225
Operon
DOOR ID:
123232
GOX2225,
GOX2226
View Structure
Genome:
Gluconobacter oxydans 621H
(
NC_006677.1
);
Phylum:
Alphaproteobacteria
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