About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
803681-803776
(-)
TPP
803418-803619 (-)
BT_0653
ThiS protein; involved in thiamine biosynthesis
BT_0653
Operon
DOOR ID:
80723
BT_0647,
BT_0648,
BT_0649
(thiH)
,
BT_0650,
BT_0651
(thiG)
,
BT_0652
(thiE)
,
BT_0653
View Structure
2
1832233-1832438
(+)
cobalamin
1832519-1834010 (+)
BT_1486
ABC transporter; ATP-binding protein
BT_1486
Operon
DOOR ID:
80899
BT_1486,
BT_1487,
BT_1488
View Structure
3
1836296-1836502
(+)
cobalamin
1836683-1838729 (+)
BT_1489
Vitamin B12 receptor; outer membrane
BT_1489
Operon
DOOR ID:
80900
BT_1489,
BT_1490,
BT_1491
View Structure
4
2403656-2403862
(+)
cobalamin
2403997-2405509 (+)
BT_1915
Pyruvate carboxylase subunit A
BT_1915
Operon
DOOR ID:
80995
BT_1915,
BT_1916,
BT_1917
View Structure
5
2460213-2460405
(-)
cobalamin
2459140-2460058 (-)
BT_1957
BT_1957
Single gene
DOOR ID:
1561356
BT_1957
View Structure
6
2511588-2511775
(+)
cobalamin
2511802-2514196 (+)
BT_1998
Chaperone protein ClpB
BT_1998
Single gene
DOOR ID:
1561381
BT_1998
View Structure
7
2628440-2628653
(-)
cobalamin
2627192-2628260 (-)
BT_2095
Putative surface layer protein
BT_2095
Single gene
DOOR ID:
1561428
BT_2095
View Structure
8
2977734-2977830
(+)
TPP
2977830-2980062 (+)
BT_2390
Putative TonB-dependent transmembrane receptor
BT_2390
Single gene
DOOR ID:
1561537
BT_2390
View Structure
9
2992117-2992212
(+)
TPP
2992214-2992781 (+)
BT_2396
Putative membrane transporter involved in nicotinamide mononucleotide transport
BT_2396
Operon
DOOR ID:
81095
BT_2396,
BT_2397
View Structure
10
5995673-5995735
(-)
fluoride
5995270-5995645 (-)
BT_4574
Putative fluoride ion transporter CrcB
BT_4574
Operon
DOOR ID:
81554
BT_4573,
BT_4574
View Structure
Genome:
Bacteroides thetaiotaomicron VPI-5482
(
NC_004663.1
);
Phylum:
Bacteroidetes/Chlorobi group
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"803681-803776";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"803418-803619";i:10;s:1:"-";i:11;s:7:"BT_0653";i:12;s:47:"ThiS protein; involved in thiamine biosynthesis";i:13;s:7:"BT_0653";i:14;s:6:"Operon";i:15;s:5:"80723";i:16;s:73:"BT_0647;BT_0648;BT_0649(thiH);BT_0650;BT_0651(thiG);BT_0652(thiE);BT_0653";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1832233-1832438";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1832519-1834010";i:10;s:1:"+";i:11;s:7:"BT_1486";i:12;s:36:"ABC transporter; ATP-binding protein";i:13;s:7:"BT_1486";i:14;s:6:"Operon";i:15;s:5:"80899";i:16;s:23:"BT_1486;BT_1487;BT_1488";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1836296-1836502";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1836683-1838729";i:10;s:1:"+";i:11;s:7:"BT_1489";i:12;s:36:"Vitamin B12 receptor; outer membrane";i:13;s:7:"BT_1489";i:14;s:6:"Operon";i:15;s:5:"80900";i:16;s:23:"BT_1489;BT_1490;BT_1491";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2403656-2403862";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2403997-2405509";i:10;s:1:"+";i:11;s:7:"BT_1915";i:12;s:30:"Pyruvate carboxylase subunit A";i:13;s:7:"BT_1915";i:14;s:6:"Operon";i:15;s:5:"80995";i:16;s:23:"BT_1915;BT_1916;BT_1917";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2460213-2460405";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2459140-2460058";i:10;s:1:"-";i:11;s:7:"BT_1957";i:12;s:0:"";i:13;s:7:"BT_1957";i:14;s:11:"Single gene";i:15;s:7:"1561356";i:16;s:7:"BT_1957";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2511588-2511775";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2511802-2514196";i:10;s:1:"+";i:11;s:7:"BT_1998";i:12;s:22:"Chaperone protein ClpB";i:13;s:7:"BT_1998";i:14;s:11:"Single gene";i:15;s:7:"1561381";i:16;s:7:"BT_1998";i:17;s:61:"protein refolding [GO:0042026]; response to heat [GO:0009408]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2628440-2628653";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2627192-2628260";i:10;s:1:"-";i:11;s:7:"BT_2095";i:12;s:30:"Putative surface layer protein";i:13;s:7:"BT_2095";i:14;s:11:"Single gene";i:15;s:7:"1561428";i:16;s:7:"BT_2095";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2977734-2977830";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2977830-2980062";i:10;s:1:"+";i:11;s:7:"BT_2390";i:12;s:46:"Putative TonB-dependent transmembrane receptor";i:13;s:7:"BT_2390";i:14;s:11:"Single gene";i:15;s:7:"1561537";i:16;s:7:"BT_2390";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2992117-2992212";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2992214-2992781";i:10;s:1:"+";i:11;s:7:"BT_2396";i:12;s:79:"Putative membrane transporter involved in nicotinamide mononucleotide transport";i:13;s:7:"BT_2396";i:14;s:6:"Operon";i:15;s:5:"81095";i:16;s:15:"BT_2396;BT_2397";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_004663.1";i:2;s:38:"Bacteroides thetaiotaomicron VPI-5482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"5995673-5995735";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"5995270-5995645";i:10;s:1:"-";i:11;s:7:"BT_4574";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:7:"BT_4574";i:14;s:6:"Operon";i:15;s:5:"81554";i:16;s:15:"BT_4573;BT_4574";i:17;s:45:"fluoride transmembrane transport [GO:1903424]";i:18;s:15:"View Structure ";}}
