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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1255626-1255819
(-)
yybP-ykoY
1255027-1255612 (-)
PSPTO_1145
PSPTO_1145
Single gene
DOOR ID:
1551693
PSPTO_1145
View Structure
2
1878136-1878350
(+)
cobalamin
1878440-1879052 (+)
cobO
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
PSPTO_1708
Single gene
DOOR ID:
1552240
PSPTO_1708
(cobO)
View Structure
3
2008912-2009078
(-)
FMN
2008265-2008778 (-)
ribH-2
6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8)
PSPTO_1839
Single gene
DOOR ID:
1552369
PSPTO_1839
(ribH-2)
View Structure
4
3542311-3542535
(-)
cobalamin
3541132-3542197 (-)
PSPTO_3150
Cobalamin synthesis protein/P47K family protein
PSPTO_3150
Single gene
DOOR ID:
1553639
PSPTO_3150
View Structure
5
3542594-3542808
(+)
cobalamin
3542903-3543089 (+)
PSPTO_3151
PSPTO_3151
Single gene
DOOR ID:
1553640
PSPTO_3151
View Structure
6
3679925-3680123
(+)
cobalamin
3681274-3682285 (+)
PSPTO_3257
Iron ABC transporter; permease protein; putative
PSPTO_3257
Single gene
DOOR ID:
1553737
PSPTO_3257
View Structure
7
4244883-4245052
(+)
yybP-ykoY
4245059-4245632 (+)
PSPTO_3755
Putative manganese efflux pump MntP
PSPTO_3755
Single gene
DOOR ID:
1554222
PSPTO_3755
View Structure
8
5215637-5215709
(-)
fluoride
5214209-5215568 (-)
PSPTO_4619
Chloride/fluoride channel protein
PSPTO_4619
Single gene
DOOR ID:
1555056
PSPTO_4619
View Structure
9
5648630-5648734
(-)
TPP
5646583-5648473 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PSPTO_4976
Single gene
DOOR ID:
1555393
PSPTO_4976
(thiC)
View Structure
Genome:
Pseudomonas syringae pv. tomato str. DC3000
(
NC_004578.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_004578.1";i:2;s:44:"Pseudomonas syringae pv. tomato str. DC3000 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1255626-1255819";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1255027-1255612";i:10;s:1:"-";i:11;s:10:"PSPTO_1145";i:12;s:0:"";i:13;s:10:"PSPTO_1145";i:14;s:11:"Single gene";i:15;s:7:"1551693";i:16;s:10:"PSPTO_1145";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004578.1";i:2;s:44:"Pseudomonas syringae pv. tomato str. DC3000 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1878136-1878350";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1878440-1879052";i:10;s:1:"+";i:11;s:4:"cobO";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:10:"PSPTO_1708";i:14;s:11:"Single gene";i:15;s:7:"1552240";i:16;s:16:"PSPTO_1708(cobO)";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004578.1";i:2;s:44:"Pseudomonas syringae pv. tomato str. DC3000 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2008912-2009078";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2008265-2008778";i:10;s:1:"-";i:11;s:6:"ribH-2";i:12;s:92:"6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8)";i:13;s:10:"PSPTO_1839";i:14;s:11:"Single gene";i:15;s:7:"1552369";i:16;s:18:"PSPTO_1839(ribH-2)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004578.1";i:2;s:44:"Pseudomonas syringae pv. tomato str. DC3000 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3542311-3542535";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3541132-3542197";i:10;s:1:"-";i:11;s:10:"PSPTO_3150";i:12;s:47:"Cobalamin synthesis protein/P47K family protein";i:13;s:10:"PSPTO_3150";i:14;s:11:"Single gene";i:15;s:7:"1553639";i:16;s:10:"PSPTO_3150";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004578.1";i:2;s:44:"Pseudomonas syringae pv. tomato str. DC3000 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3542594-3542808";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3542903-3543089";i:10;s:1:"+";i:11;s:10:"PSPTO_3151";i:12;s:0:"";i:13;s:10:"PSPTO_3151";i:14;s:11:"Single gene";i:15;s:7:"1553640";i:16;s:10:"PSPTO_3151";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_004578.1";i:2;s:44:"Pseudomonas syringae pv. tomato str. DC3000 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3679925-3680123";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3681274-3682285";i:10;s:1:"+";i:11;s:10:"PSPTO_3257";i:12;s:48:"Iron ABC transporter; permease protein; putative";i:13;s:10:"PSPTO_3257";i:14;s:11:"Single gene";i:15;s:7:"1553737";i:16;s:10:"PSPTO_3257";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_004578.1";i:2;s:44:"Pseudomonas syringae pv. tomato str. DC3000 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4244883-4245052";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4245059-4245632";i:10;s:1:"+";i:11;s:10:"PSPTO_3755";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"PSPTO_3755";i:14;s:11:"Single gene";i:15;s:7:"1554222";i:16;s:10:"PSPTO_3755";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_004578.1";i:2;s:44:"Pseudomonas syringae pv. tomato str. DC3000 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5215637-5215709";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"5214209-5215568";i:10;s:1:"-";i:11;s:10:"PSPTO_4619";i:12;s:33:"Chloride/fluoride channel protein";i:13;s:10:"PSPTO_4619";i:14;s:11:"Single gene";i:15;s:7:"1555056";i:16;s:10:"PSPTO_4619";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_004578.1";i:2;s:44:"Pseudomonas syringae pv. tomato str. DC3000 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5648630-5648734";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5646583-5648473";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"PSPTO_4976";i:14;s:11:"Single gene";i:15;s:7:"1555393";i:16;s:16:"PSPTO_4976(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
