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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
107582-107657
(-)
SAH
106033-107458 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
RSc0093
Single gene
DOOR ID:
1474358
RSc0093
(ahcY)
View Structure
2
132357-132458
(-)
TPP
130367-132263 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
RSc0113
Operon
DOOR ID:
51030
RSc0111,
RSc0112,
RSc0113
(thiC)
View Structure
3
777920-778049
(-)
ZMP-ZTP
776546-777794 (-)
glyA
Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1)
RSc0729
Single gene
DOOR ID:
1474590
RSc0729
(glyA)
View Structure
4
1941826-1941892
(-)
fluoride
1940417-1941713 (-)
RSc1803
Probable cl-channel; voltage gated transmembrane protein
RSc1803
Single gene
DOOR ID:
1474933
RSc1803
View Structure
5
2274739-2274951
(+)
yybP-ykoY
2275859-2276780 (+)
RSc2101
Putative type III effector protein
RSc2101
Single gene
DOOR ID:
1475025
RSc2101
View Structure
6
2608997-2609253
(-)
cobalamin
2606992-2608858 (-)
RSc2400
Probable tonb-dependent receptor protein
RSc2400
Operon
DOOR ID:
51517
RSc2398,
RSc2399,
RSc2400
View Structure
7
3545575-3545672
(+)
glycine
3545938-3547066 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
RSc3293
Operon
DOOR ID:
51696
RSc3293
(gcvT)
,
RSc3294
(gcvH)
,
RSc3295
(gcvP)
View Structure
8
3545686-3545809
(+)
glycine
3545938-3547066 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
RSc3293
Operon
DOOR ID:
51696
RSc3293
(gcvT)
,
RSc3294
(gcvH)
,
RSc3295
(gcvP)
View Structure
Genome:
Ralstonia solanacearum GMI1000
(
NC_003295.1
);
Phylum:
Betaproteobacteria
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