Genome: Clostridium acetobutylicum ATCC 824 (NC_003030.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 179915-180075 (+)glmS180164-181991 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CA_C0158Single gene

DOOR ID: 1447086		CA_C0158 (glmS) View Structure
2 453563-453665 (+)SAM453740-454895 (+)CA_C0390

Cystathionine gamma-synthase		CA_C0390Operon

DOOR ID: 39009		CA_C0389,
CA_C0390,
CA_C0391		 View Structure
3 648479-648561 (+)c-di-GMP-II649181-651818 (+)CA_C0561

Endoglucanase 		CA_C0561Single gene

DOOR ID: 1447256		CA_C0561 View Structure
4 671251-671356 (-)SAM667537-671176 (-)metH

Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)		CA_C0578Single gene

DOOR ID: 1447264		CA_C0578 (metH) View Structure
5 682355-682469 (+)FMN682525-683677 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CA_C0590Operon

DOOR ID: 39050		CA_C0590 (ribD),
CA_C0591 (ribB),
CA_C0592 (ribA),
CA_C0593 (ribH),
CA_C0594,
CA_C0595		 View Structure
6 704200-704385 (+)lysine704479-705775 (+)lisA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		CA_C0608Single gene

DOOR ID: 1447269		CA_C0608 (lisA) View Structure
7 789407-789580 (+)ykoK789857-791130 (+)CA_C0683

CA_C0683Single gene

DOOR ID: 1447302		CA_C0683 View Structure
8 1002176-1002274 (+)purine1002649-1003957 (+)CA_C0872

Xanthine permease		CA_C0872Operon

DOOR ID: 39104		CA_C0872,
CA_C0873 (xpt)		 View Structure
9 1073785-1073888 (-)SAM1072665-1073577 (+)metB

Cysteine synthase		CA_C0931Operon

DOOR ID: 39114		CA_C0929,
CA_C0930 (metB),
CA_C0931		 View Structure
10 1127408-1127485 (+)ZMP-ZTP1127584-1129816 (+)pflB

Pyruvate-formate lyase		CA_C0980Operon

DOOR ID: 39122		CA_C0980 (pflB),
CA_C0981 (pflA)		 View Structure
11 1131537-1131641 (+)SAM1131719-1132682 (+)CA_C0984

Methionine import ATP-binding protein MetN 		CA_C0984Operon

DOOR ID: 39123		CA_C0984,
CA_C0985,
CA_C0986		 View Structure
12 1374236-1374371 (+)ydaO-yuaA1374408-1375170 (+)CA_C1232

Predicted lytic murein transglycosylase (N-term. LysM motif repeat domain)		CA_C1232Single gene

DOOR ID: 1447538		CA_C1232 View Structure
13 1509949-1510136 (+)cobalamin1510262-1510934 (+)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CA_C1365Operon

DOOR ID: 39200		CA_C1365 (cbiM),
CA_C1366,
CA_C1367 (cbiQ)		 View Structure
14 1541773-1541875 (+)TPP1541929-1542688 (+)CA_C1397

Predicted hydrolase of PHP superfamily		CA_C1397Operon

DOOR ID: 39203		CA_C1397,
CA_C1398,
CA_C1399,
CA_C1400,
CA_C1401		 View Structure
15 1621882-1621971 (-)glycine1620375-1621743 (-)CA_C1472

Amino acid permease		CA_C1472Single gene

DOOR ID: 1447620		CA_C1472 View Structure
16 1730397-1730460 (+)fluoride1730508-1730928 (+)CA_C1586

Putative fluoride ion transporter CrcB 1		CA_C1586Operon

DOOR ID: 39240		CA_C1586,
CA_C1587		 View Structure
17 1976371-1976471 (+)SAM1976570-1977476 (+)metB

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		CA_C1825Single gene

DOOR ID: 1447747		CA_C1825 (metB) View Structure
18 2534636-2534729 (+)THF2534858-2535647 (+)CA_C2418

Uncharacterized conserved membrane protein		CA_C2418Operon

DOOR ID: 39413		CA_C2417,
CA_C2418		 View Structure
19 2557883-2558061 (+)cobalamin2558221-2559637 (+)CA_C2441

Ferrichrome-binding periplasmic protein		CA_C2441Operon

DOOR ID: 39419		CA_C2441,
CA_C2442,
CA_C2443,
CA_C2444		 View Structure
20 2562148-2562228 (+)ZMP-ZTP2562273-2563449 (+)CA_C2445

AICAR transformylase domain of PurH-like protein		CA_C2445Single gene

DOOR ID: 1447902		CA_C2445 View Structure
21 2824856-2824953 (-)purine2823267-2824725 (-)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CA_C2701Single gene

DOOR ID: 1448036		CA_C2701 (guaB) View Structure
22 2904949-2905050 (-)purine2903343-2904633 (-)CA_C2772

Permease		CA_C2772Single gene

DOOR ID: 1448064		CA_C2772 View Structure
23 2914733-2914841 (-)SAM2913334-2914618 (-)cysD

O-acetylhomoserine sulfhydrylase		CA_C2783Single gene

DOOR ID: 1448073		CA_C2783 (cysD) View Structure
24 2971806-2971922 (-)FMN2971095-2971725 (-)CA_C2841

Riboflavin transporter		CA_C2841Single gene

DOOR ID: 1448114		CA_C2841 View Structure
25 2991297-2991407 (-)SAM2990053-2991229 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CA_C2856Single gene

DOOR ID: 1448121		CA_C2856 (metK) View Structure
26 3058022-3058129 (-)TPP3057723-3057918 (-)thiS

Uncharacterized protein; possibly involved in thiamine biosynthesis		CA_C2924Operon

DOOR ID: 39502		CA_C2920 (tenI),
CA_C2921 (thiH),
CA_C2922 (thiG),
CA_C2923,
CA_C2924 (thiS)		 View Structure
27 3060579-3060679 (+)TPP3060780-3061413 (+)CA_C2928

Predicted membrane protein		CA_C2928Single gene

DOOR ID: 1448143		CA_C2928 View Structure
28 3156118-3156266 (-)TPP3154714-3156025 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CA_C3014Single gene

DOOR ID: 1448183		CA_C3014 (thiC) View Structure
29 3232090-3232211 (+)ydaO-yuaA3232214-3232799 (+)CA_C3081

Spore-cortex-lytic enzyme; SLEB		CA_C3081Single gene

DOOR ID: 1448205		CA_C3081 View Structure
30 3249957-3250063 (-)TPP3249046-3249868 (-)thiK

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		CA_C3096Operon

DOOR ID: 39534		CA_C3095 (thiK),
CA_C3096 (thiK)		 View Structure
31 3501683-3501846 (-)ykoK3500255-3501491 (-)CA_C3329

Putative Mn transporter; NRAMP family		CA_C3329Single gene

DOOR ID: 1448286		CA_C3329 View Structure
32 3752879-3752962 (-)c-di-GMP-II3752443-3752848 (-)CA_C3556

Probable S-layer protein		CA_C3556Single gene

DOOR ID: 1448425		CA_C3556 View Structure
33 3801637-3801809 (+)lysine3801900-3802761 (+)dapA

4-hydroxy-tetrahydrodipicolinate synthase 2 (HTPA synthase 2) 		CA_C3600Operon

DOOR ID: 39617		CA_C3599,
CA_C3600 (dapA)		 View Structure