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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
825604-825816
(-)
ydaO-yuaA
824837-825590 (-)
MAP0805c
MAP0805c
Single gene
DOOR ID:
1431598
MAP0805c
View Structure
2
1323334-1323518
(+)
ykoK
1323810-1324047 (+)
MAP1245
MAP1245
Single gene
DOOR ID:
1431746
MAP1245
View Structure
3
1663674-1663849
(+)
ykoK
1664131-1664431 (+)
PE_5
MAP1514
Operon
DOOR ID:
30592
MAP1514
(PE_5)
,
MAP1515,
MAP1516,
MAP1517
View Structure
4
1693363-1693460
(+)
glycine
1693636-1696462 (+)
gcvB
MAP1545
Single gene
DOOR ID:
1431852
MAP1545
(gcvB)
View Structure
5
2041528-2041607
(-)
SAH
2037739-2041528 (-)
metH
MAP1859c
Single gene
DOOR ID:
1431963
MAP1859c
(metH)
View Structure
6
2255495-2255602
(+)
ykkC-yxkD
2255640-2256369 (+)
MAP2047
MAP2047
Single gene
DOOR ID:
1432043
MAP2047
View Structure
7
2919538-2919681
(+)
cobalamin
2919852-2921610 (+)
MAP2595
MAP2595
Operon
DOOR ID:
30833
MAP2595,
MAP2596
(fadD21_2)
View Structure
8
2995864-2996105
(+)
cobalamin
2996240-2998511 (+)
metE
MAP2661
Single gene
DOOR ID:
1432255
MAP2661
(metE)
View Structure
9
3831493-3831556
(+)
ykkC-III
3831878-3832907 (-)
MAP3452c
MAP3452c
single gene
DOOR ID:
31036
MAP3452c
View Structure
10
3838572-3838694
(+)
SAM-IV
3838859-3840230 (+)
metC
MAP3457
Operon
DOOR ID:
31038
MAP3457
(metC)
,
MAP3458
(metX)
,
MAP3459
View Structure
11
3916507-3916677
(+)
ykoK
3916911-3917127 (+)
MAP3516
MAP3516
Single gene
DOOR ID:
1432545
MAP3516
View Structure
12
4362946-4363055
(+)
TPP
4364112-4364310 (+)
MAP3899
MAP3899
Operon
DOOR ID:
31137
MAP3898,
MAP3899,
MAP3900
(thiG)
,
MAP3901
View Structure
13
4377094-4377204
(-)
TPP
4374634-4375483 (-)
thiD
MAP3912c
Operon
DOOR ID:
31141
MAP3911c,
MAP3912c
(thiD)
,
MAP3913c
(thiC)
View Structure
Genome:
Mycobacterium avium subsp. paratuberculosis K-10
(
NC_002944.2
);
Phylum:
Actinobacteria
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