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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79185-79275
(-)
glycine
77599-78877 (-)
glyA
Serine hydroxymethyltransferase 2 (SHM2) (SHMT 2) (Serine methylase 2)
MT0076
Operon
DOOR ID:
22328
MT0075
(sdaA)
,
MT0076
(glyA)
View Structure
2
309800-309973
(-)
cobalamin
309658-309766 (-)
MT0270
MT0270
Operon
DOOR ID:
22365
MT0267
(cobU)
,
MT0268
(cobQ-1)
,
MT0269,
MT0270
View Structure
3
502496-502606
(+)
TPP
503615-503822 (+)
MT0429
MT0429
Operon
DOOR ID:
22394
MT0428,
MT0429,
MT0430
(thiG)
View Structure
4
511665-511775
(-)
TPP
509206-510004 (-)
thiD
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase (Hydroxymethylpyrimidine kinase) (HMP kinase) (Hydroxymethylpyrimidine phosphate kinase) (HMP-P kinase) (HMP-phosphate kinase) (HMPP kinase)
MT0436
Operon
DOOR ID:
22395
MT0435,
MT0436
(thiD)
,
MT0437
(thiC)
View Structure
5
965549-965771
(-)
ydaO-yuaA
964315-965539 (-)
MT0890
Resuscitation-promoting factor RpfA
MT0890
Single gene
DOOR ID:
1418326
MT0890
View Structure
6
1261026-1261244
(-)
cobalamin
1258613-1260893 (-)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MT1165
Single gene
DOOR ID:
1418441
MT1165
(metE)
View Structure
7
1735662-1735831
(+)
ykoK
1736128-1736365 (+)
MT1586
MT1586
Single gene
DOOR ID:
1418603
MT1586
View Structure
8
2045015-2045189
(+)
ykoK
2045491-2045791 (+)
MT1855
PE family protein
MT1855
Operon
DOOR ID:
22728
MT1855,
MT1856
View Structure
9
2072838-2072935
(+)
glycine
2073101-2075927 (+)
gcvP
Probable glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MT1880
Single gene
DOOR ID:
1418710
MT1880
(gcvP)
View Structure
10
3723579-3723698
(+)
SAM-IV
3723734-3725084 (+)
MT3443
Transulfuration enzyme family protein
MT3443
Operon
DOOR ID:
23098
MT3443,
MT3444
(metX)
,
MT3445
View Structure
Genome:
Mycobacterium tuberculosis CDC1551
(
NC_002755.2
);
Phylum:
Actinobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002755.2";i:2;s:35:"Mycobacterium tuberculosis CDC1551 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"965549-965771";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"964315-965539";i:10;s:1:"-";i:11;s:6:"MT0890";i:12;s:36:"Resuscitation-promoting factor RpfA ";i:13;s:6:"MT0890";i:14;s:11:"Single gene";i:15;s:7:"1418326";i:16;s:6:"MT0890";i:17;s:25:"pathogenesis [GO:0009405]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002755.2";i:2;s:35:"Mycobacterium tuberculosis CDC1551 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1261026-1261244";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1258613-1260893";i:10;s:1:"-";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:6:"MT1165";i:14;s:11:"Single gene";i:15;s:7:"1418441";i:16;s:12:"MT1165(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002755.2";i:2;s:35:"Mycobacterium tuberculosis CDC1551 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1735662-1735831";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1736128-1736365";i:10;s:1:"+";i:11;s:6:"MT1586";i:12;s:0:"";i:13;s:6:"MT1586";i:14;s:11:"Single gene";i:15;s:7:"1418603";i:16;s:6:"MT1586";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002755.2";i:2;s:35:"Mycobacterium tuberculosis CDC1551 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2045015-2045189";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2045491-2045791";i:10;s:1:"+";i:11;s:6:"MT1855";i:12;s:17:"PE family protein";i:13;s:6:"MT1855";i:14;s:6:"Operon";i:15;s:5:"22728";i:16;s:13:"MT1855;MT1856";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002755.2";i:2;s:35:"Mycobacterium tuberculosis CDC1551 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2072838-2072935";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2073101-2075927";i:10;s:1:"+";i:11;s:4:"gcvP";i:12;s:160:"Probable glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:6:"MT1880";i:14;s:11:"Single gene";i:15;s:7:"1418710";i:16;s:12:"MT1880(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002755.2";i:2;s:35:"Mycobacterium tuberculosis CDC1551 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3723579-3723698";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3723734-3725084";i:10;s:1:"+";i:11;s:6:"MT3443";i:12;s:37:"Transulfuration enzyme family protein";i:13;s:6:"MT3443";i:14;s:6:"Operon";i:15;s:5:"23098";i:16;s:26:"MT3443;MT3444(metX);MT3445";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}}
