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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1291224-1291324
(-)
c-di-GMP-I
1289654-1291118 (-)
VEA_001124
VEA_001124
single gene
DOOR ID:
2723888
VEA_001124
View Structure
2
2580794-2580883
(+)
c-di-GMP-I
2581026-2581590 (+)
VEA_003942
VEA_003942
single gene
DOOR ID:
2722915
VEA_003942
View Structure
3
573391-573591
(+)
cobalamin
573646-575482 (+)
VEA_002156
VEA_002156
Single gene
DOOR ID:
2722101
VEA_002156
View Structure
4
672188-672327
(+)
FMN
672440-673097 (+)
VEA_000572
VEA_000572
Single gene
DOOR ID:
2723581
VEA_000572
View Structure
5
2228434-2228533
(+)
glycine
2228655-2230032 (+)
VEA_003625
VEA_003625
Single gene
DOOR ID:
2722751
VEA_003625
View Structure
6
2482999-2483181
(-)
lysine
2481287-2482889 (-)
VEA_003851
VEA_003851
Single gene
DOOR ID:
2722874
VEA_003851
View Structure
7
823249-823427
(-)
lysine
821794-823147 (-)
VEA_002356
VEA_002356
Single gene
DOOR ID:
2722198
VEA_002356
View Structure
8
1495297-1495431
(+)
MOCO
1496514-1497027 (+)
VEA_002955
VEA_002955
Operon
DOOR ID:
1311679
VEA_002955,
VEA_002956,
VEA_002957,
VEA_002958
View Structure
9
687622-687721
(+)
purine
687810-688824 (+)
VEA_000592
VEA_000592
Single gene
DOOR ID:
2723595
VEA_000592
View Structure
10
484424-484522
(+)
TPP
484686-486627 (+)
VEA_002072
VEA_002072
Operon
DOOR ID:
1311511
VEA_002072,
VEA_002073,
VEA_002074,
VEA_002075,
VEA_002076,
VEA_002077
View Structure
11
85297-85433
(-)
TPP
84232-85225 (-)
VEA_001686
VEA_001686
Operon
DOOR ID:
1311436
VEA_001684,
VEA_001685,
VEA_001686
View Structure
12
994738-994845
(+)
TPP
994941-995802 (+)
VEA_000863
VEA_000863
Operon
DOOR ID:
1312132
VEA_000869,
VEA_000868,
VEA_000867,
VEA_000866,
VEA_000865,
VEA_000864,
VEA_000863
View Structure
13
405081-405195
(-)
yybP-ykoY
404431-404986 (-)
VEA_001996
VEA_001996
Operon
DOOR ID:
1311494
VEA_001996,
VEA_001997
View Structure
Genome:
Vibrio sp. Ex25
(
NC_013456.1
);
Taxonomy:
Gammaproteobacteria
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