Genome: Vibrio parahaemolyticus RIMD 2210633 (NC_004603.1); Taxonomy: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 1078653-1078742 (-)c-di-GMP-I1077945-1078536 (-)VP1028

Uncharacterized protein		VP1028operon

DOOR ID: 78616		VP1028,
VP1029		 View Structure
2 1695926-1696030 (+)c-di-GMP-I1696130-1697594 (+)VPA1598

GlcNAc-binding protein A		VPA1598single gene

DOOR ID: 1558170		VPA1598 View Structure
3 3142951-3143153 (-)cobalamin3141019-3142894 (-)VP2938

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)		VP2938Single gene

DOOR ID: 1557298		VP2938 View Structure
4 1323634-1323774 (+)FMN1323887-1324544 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		VPA1250Single gene

DOOR ID: 1558010		VPA1250 View Structure
5 1856047-1856148 (+)glycine1856265-1857642 (+)VP1741

Sodium/alanine symporter		VP1741Single gene

DOOR ID: 1556744		VP1741 View Structure
6 1190723-1190903 (+)lysine1191016-1192618 (+)VP1134

VP1134Single gene

DOOR ID: 1556513		VP1134 View Structure
7 2873784-2873962 (+)lysine2874064-2875417 (+)VP2715

Aspartokinase 		VP2715Single gene

DOOR ID: 1557188		VP2715 View Structure
8 2204280-2204413 (-)MOCO2202686-2203199 (-)VP2095

Molybdenum cofactor biosynthesis protein B		VP2095Operon

DOOR ID: 78816		VP2092,
VP2093,
VP2094,
VP2095		 View Structure
9 1369721-1369820 (+)purine1369909-1370923 (+)VPA1292

Adenine deaminase (ADE) (Adenine aminohydrolase) (AAH)		VPA1292Operon

DOOR ID: 79245		VPA1292,
VPA1293		 View Structure
10 127914-128021 (-)TPP126959-127817 (-)VPA0136

Phosphomethylpyrimidine kinase		VPA0136Operon

DOOR ID: 79040		VPA0130,
VPA0131,
VPA0132,
VPA0133,
VPA0134,
VPA0135,
VPA0136		 View Structure
11 311584-311720 (+)TPP311792-312785 (+)tbpA

Thiamin ABC transporter; periplasmic thiamin-binding protein		VP0316Operon

DOOR ID: 78472		VP0316,
VP0317,
VP0318		 View Structure
12 3232464-3232562 (-)TPP3230354-3232295 (-)VP3027

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		VP3027Operon

DOOR ID: 78990		VP3025,
VP3026,
VP3027		 View Structure
13 22641-22755 (+)yybP-ykoY22846-23401 (+)VP0023

VP0023Single gene

DOOR ID: 1556048		VP0023 View Structure