Genome: Vibrio fischeri MJ11 (NC_011186.1); Taxonomy: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 1780753-1780835 (+)c-di-GMP-I1780963-1781551 (+)VFMJ11_1676

DNA transformation protein TfoX		VFMJ11_1676single gene

DOOR ID: 2380207		VFMJ11_1676 View Structure
2 1216361-1216491 (-)cobalamin1215424-1216342 (-)VFMJ11_A1095

ABC transporter; periplasmic component		VFMJ11_A1095Operon

DOOR ID: 467907		VFMJ11_A1093,
VFMJ11_A1094,
VFMJ11_A1095		 View Structure
3 2743570-2743795 (-)cobalamin2741676-2743524 (-)VFMJ11_2559

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)		VFMJ11_2559Operon

DOOR ID: 467659		VFMJ11_2557,
VFMJ11_2558,
VFMJ11_2559		 View Structure
4 1365379-1365444 (-)fluoride1364535-1365228 (-)VFMJ11_A1229

VFMJ11_A1229Operon

DOOR ID: 467932		VFMJ11_A1228,
VFMJ11_A1229		 View Structure
5 34842-34908 (+)fluoride35034-36414 (+)VFMJ11_0031

Chloride channel protein		VFMJ11_0031Single gene

DOOR ID: 2379514		VFMJ11_0031 View Structure
6 1633332-1633437 (+)glycine1633534-1634917 (+)VFMJ11_1550

Sodium/alanine symporter		VFMJ11_1550Single gene

DOOR ID: 2380380		VFMJ11_1550 View Structure
7 1859017-1859200 (-)lysine1857348-1858935 (-)VFMJ11_1750

Na+/H+ antiporter family protein		VFMJ11_1750Single gene

DOOR ID: 2380259		VFMJ11_1750 View Structure
8 353964-354138 (-)lysine352545-353898 (-)VFMJ11_0329

Aspartokinase 		VFMJ11_0329Single gene

DOOR ID: 2379598		VFMJ11_0329 View Structure
9 1028357-1028505 (+)MOCO1029495-1029975 (+)moaC

Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)		VFMJ11_0982Operon

DOOR ID: 467385		VFMJ11_0981,
VFMJ11_0982,
VFMJ11_0983,
VFMJ11_0984		 View Structure
10 259794-259906 (+)TPP259959-260976 (+)tbpA

Thiamin/thiamin pyrophosphate ABC transporter; thiamin/thiamin pyrophospate-binding protein		VFMJ11_0255Operon

DOOR ID: 467270		VFMJ11_0255,
VFMJ11_0256,
VFMJ11_0257		 View Structure
11 36713-36825 (+)TPP37013-38948 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		VFMJ11_0033Operon

DOOR ID: 467235		VFMJ11_0033,
VFMJ11_0034,
VFMJ11_0035,
VFMJ11_0036,
VFMJ11_0037,
VFMJ11_0038		 View Structure
12 392903-393000 (+)TPP393102-393981 (+)thiD

Phosphomethylpyrimidine kinase 		VFMJ11_A0354Operon

DOOR ID: 467782		VFMJ11_A0354,
VFMJ11_A0355,
VFMJ11_A0356,
VFMJ11_A0357,
VFMJ11_A0358,
VFMJ11_A0359,
VFMJ11_A0360		 View Structure
13 1206108-1206234 (+)yybP-ykoY1206317-1206887 (+)VFMJ11_A1086

Integral membrane protein		VFMJ11_A1086Single gene

DOOR ID: 2380869		VFMJ11_A1086 View Structure
14 352723-352910 (-)yybP-ykoY351738-352695 (-)VFMJ11_A0314

Tellurium resistance protein TerC		VFMJ11_A0314Single gene

DOOR ID: 2381152		VFMJ11_A0314 View Structure