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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1095382-1095512
(-)
cobalamin
1094445-1095363 (-)
fecD
ABC transporter; periplasmic component
VF_A0973
Operon
DOOR ID:
125687
VF_A0971,
VF_A0972,
VF_A0973
View Structure
2
2736076-2736294
(-)
cobalamin
2734182-2736030 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VF_2435
Operon
DOOR ID:
125494
VF_2434,
VF_2435
View Structure
3
1258735-1258800
(-)
fluoride
1257891-1258584 (-)
VF_A1118
VF_A1118
Operon
DOOR ID:
125715
VF_A1117,
VF_A1118
View Structure
4
35443-35510
(+)
fluoride
35636-37016 (+)
VF_0031
Chloride channel protein
VF_0031
Single gene
DOOR ID:
1657347
VF_0031
View Structure
5
1607848-1607953
(+)
glycine
1608050-1609433 (+)
VF_1454
Sodium-linked D-alanine glycine permease
VF_1454
Single gene
DOOR ID:
1657907
VF_1454
View Structure
6
270205-270317
(+)
TPP
270370-271387 (+)
tbpA
Thiamine/thiamine pyrophosphate ABC transporter; thiamine/thiamine pyrophospate-binding protein ThiB/TbpA/SfuA
VF_0267
Operon
DOOR ID:
125103
VF_0267,
VF_0268,
VF_0269
View Structure
7
350047-350144
(+)
TPP
350246-351125 (+)
thiD
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase
VF_A0316
Operon
DOOR ID:
125572
VF_A0316,
VF_A0317,
VF_A0318,
VF_A0319,
VF_A0320,
VF_A0321,
VF_A0322
View Structure
8
37315-37427
(+)
TPP
37616-39551 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VF_0032
Operon
DOOR ID:
125069
VF_0032,
VF_0033,
VF_0034,
VF_2576,
VF_0035,
VF_0036
View Structure
9
1085130-1085255
(+)
yybP-ykoY
1085338-1085908 (+)
VF_A0964
Integral membrane protein
VF_A0964
Single gene
DOOR ID:
1658849
VF_A0964
View Structure
10
309426-309613
(-)
yybP-ykoY
308441-309398 (-)
alx
Putative membrane-bound redox modulator that is induced by high pH
VF_A0278
Single gene
DOOR ID:
1658516
VF_A0278
View Structure
Genome:
Vibrio fischeri ES114
(
NC_006841.2
);
Taxonomy:
Gammaproteobacteria
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VF_2435";i:17;s:27:"ion transport [GO:0006811] ";i:18;N;}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006841.2";i:2;s:22:"Vibrio fischeri ES114 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1258735-1258800";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1257891-1258584";i:10;s:1:"-";i:11;s:8:"VF_A1118";i:12;s:0:"";i:13;s:8:"VF_A1118";i:14;s:6:"Operon";i:15;s:6:"125715";i:16;s:18:"VF_A1117; VF_A1118";i:17;s:1:" ";i:18;N;}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006840.2";i:2;s:22:"Vibrio fischeri ES114 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"35443-35510";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:11:"35636-37016";i:10;s:1:"+";i:11;s:7:"VF_0031";i:12;s:24:"Chloride channel protein";i:13;s:7:"VF_0031";i:14;s:11:"Single gene";i:15;s:7:"1657347";i:16;s:7:"VF_0031";i:17;s:1:" ";i:18;N;}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006840.2";i:2;s:22:"Vibrio fischeri ES114 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1607848-1607953";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1608050-1609433";i:10;s:1:"+";i:11;s:7:"VF_1454";i:12;s:40:"Sodium-linked D-alanine glycine permease";i:13;s:7:"VF_1454";i:14;s:11:"Single gene";i:15;s:7:"1657907";i:16;s:7:"VF_1454";i:17;s:1:" ";i:18;N;}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006840.2";i:2;s:22:"Vibrio fischeri ES114 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"270205-270317";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"270370-271387";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:110:"Thiamine/thiamine pyrophosphate ABC transporter; thiamine/thiamine pyrophospate-binding protein ThiB/TbpA/SfuA";i:13;s:7:"VF_0267";i:14;s:6:"Operon";i:15;s:6:"125103";i:16;s:25:"VF_0267; VF_0268; VF_0269";i:17;s:32:"thiamine transport [GO:0015888] ";i:18;N;}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006841.2";i:2;s:22:"Vibrio fischeri ES114 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"350047-350144";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"350246-351125";i:10;s:1:"+";i:11;s:4:"thiD";i:12;s:85:"Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase ";i:13;s:8:"VF_A0316";i:14;s:6:"Operon";i:15;s:6:"125572";i:16;s:68:"VF_A0316; VF_A0317; VF_A0318; VF_A0319; VF_A0320; VF_A0321; VF_A0322";i:17;s:43:"thiamine biosynthetic process [GO:0009228] ";i:18;N;}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006840.2";i:2;s:22:"Vibrio fischeri ES114 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"37315-37427";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"37616-39551";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"VF_0032";i:14;s:6:"Operon";i:15;s:6:"125069";i:16;s:52:"VF_0032; 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