Genome: Vibrio cholerae O395 (NC_009457.1); Taxonomy: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 1413802-1413888 (+)c-di-GMP-I1414001-1414589 (+)VC0395_A1325

Uncharacterized protein		VC0395_A1325single gene

DOOR ID: 2038562		VC0395_A1325 View Structure
2 1945221-1945307 (+)c-di-GMP-I1945420-1946008 (+)VC395_1839

VC395_1839single gene

DOOR ID: 2553220		VC395_1839 View Structure
3 469758-469864 (-)c-di-GMP-I468182-469640 (-)VC0395_0423

VC0395_0423single gene

DOOR ID: 2037409		VC0395_0423 View Structure
4 794078-794184 (+)c-di-GMP-I794301-795759 (+)VC395_A0835

VC395_A0835single gene

DOOR ID: 2554144		VC395_A0835 View Structure
5 2498360-2498584 (-)cobalamin2496480-2498316 (-)VC0395_A2342

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)		VC0395_A2342Single gene

DOOR ID: 2038310		VC0395_A2342 View Structure
6 5702-5926 (-)cobalamin3822-5658 (-)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)		VC395_0005Single gene

DOOR ID: 2552550		VC395_0005 View Structure
7 1050355-1050493 (-)FMN1049583-1050240 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		VC395_A1083Single gene

DOOR ID: 2554274		VC395_A1083 View Structure
8 213449-213587 (+)FMN213701-214358 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		VC0395_0181Single gene

DOOR ID: 2037219		VC0395_0181 View Structure
9 1078841-1078940 (-)glycine1077377-1078748 (-)VC0395_A1032

Sodium/alanine symporter		VC0395_A1032Single gene

DOOR ID: 2037972		VC0395_A1032 View Structure
10 1610260-1610359 (-)glycine1608796-1610167 (-)VC395_1541

VC395_1541Single gene

DOOR ID: 2553114		VC395_1541 View Structure
11 1254992-1255174 (+)lysine1255289-1256891 (+)VC395_1198

VC395_1198Single gene

DOOR ID: 2552976		VC395_1198 View Structure
12 266999-267171 (-)lysine265339-266929 (-)VC395_A0250

VC395_A0250Single gene

DOOR ID: 2553829		VC395_A0250 View Structure
13 2956342-2956519 (-)lysine2954875-2956231 (-)lysC

Aspartokinase 		VC0395_A2809Single gene

DOOR ID: 2038675		VC0395_A2809 View Structure
14 463690-463867 (-)lysine462223-463663 (-)lysC

VC395_0435Single gene

DOOR ID: 2552695		VC395_0435 View Structure
15 723573-723755 (+)lysine723870-725472 (+)VC0395_A0701

Putative membrane protein		VC0395_A0701Single gene

DOOR ID: 2037872		VC0395_A0701 View Structure
16 993798-993970 (+)lysine994039-995629 (+)VC0395_1016

Putative membrane protein		VC0395_1016Single gene

DOOR ID: 2037101		VC0395_1016 View Structure
17 1115172-1115311 (+)MOCO1116348-1116861 (+)moaB

VC395_1039Operon

DOOR ID: 1308981		VC395_1038,
VC395_1039,
VC395_1040,
VC395_1041,
VC395_1042		 View Structure
18 583753-583892 (+)MOCO584929-585442 (+)moaB

Molybdenum cofactor biosynthesis protein B		VC0395_A0545Operon

DOOR ID: 304486		VC0395_A0544,
VC0395_A0545,
VC0395_A0546,
VC0395_A0547,
VC0395_A0548		 View Structure
19 116739-116837 (-)TPP114700-116638 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		VC395_0119Operon

DOOR ID: 1308797		VC395_0119,
VC395_0118,
VC395_0117,
VC395_0116,
VC395_0115,
VC395_0114		 View Structure
20 1464782-1464892 (+)TPP1464951-1465800 (+)thiD

VC395_1415Single gene

DOOR ID: 2553056		VC395_1415 View Structure
21 2275570-2275707 (-)TPP2274513-2275506 (-)tbpA

Thiamine ABC transporter; periplasmic thiamin-binding protein		VC0395_A2119Operon

DOOR ID: 304770		VC0395_A2117,
VC0395_A2118,
VC0395_A2119		 View Structure
22 2609391-2609489 (-)TPP2607352-2609290 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		VC0395_A2452Operon

DOOR ID: 304831		VC0395_A2450,
VC0395_A2451,
VC0395_A2452		 View Structure
23 2806990-2807127 (-)TPP2805933-2806926 (-)tbpA

VC395_2652Operon

DOOR ID: 1309286		VC395_2650,
VC395_2651,
VC395_2652,
VC395_2653,
VC395_2654,
VC395_2655		 View Structure
24 933363-933473 (+)TPP933532-934381 (+)thiD

Phosphomethylpyrimidine kinase 		VC0395_A0914Single gene

DOOR ID: 2038540		VC0395_A0914 View Structure
25 1339128-1339297 (+)ykoK1339396-1340752 (+)mgtE-1

Magnesium transporter		VC0395_A1260Single gene

DOOR ID: 2037956		VC0395_A1260 View Structure
26 1870547-1870716 (+)ykoK1870815-1872171 (+)mgtE-1

VC395_1772Single gene

DOOR ID: 2553192		VC395_1772 View Structure
27 156485-156594 (-)yybP-ykoY155837-156440 (-)VC395_0158

VC395_0158Single gene

DOOR ID: 2552616		VC395_0158 View Structure
28 2649137-2649246 (-)yybP-ykoY2648489-2649092 (-)VC0395_A2497

Putative manganese exporter (Manganese exporter A)		VC0395_A2497Single gene

DOOR ID: 2038094		VC0395_A2497 View Structure