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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1860690-1860776
(+)
c-di-GMP-I
1860889-1861477 (+)
VC1722
VC1722
single gene
DOOR ID:
1396348
VC1722
View Structure
2
755256-755362
(+)
c-di-GMP-I
755479-756937 (+)
VCA0811
GlcNAc-binding protein A
VCA0811
single gene
DOOR ID:
1397185
VCA0811
View Structure
3
145123-145326
(+)
cobalamin
145369-147205 (+)
VC0156
VC0156
Single gene
DOOR ID:
1395759
VC0156
View Structure
4
1011455-1011593
(-)
FMN
1010683-1011340 (-)
ribB
VCA1060
Single gene
DOOR ID:
1397314
VCA1060
View Structure
5
1520426-1520525
(-)
glycine
1518956-1520333 (-)
VC1422
VC1422
Single gene
DOOR ID:
1396248
VC1422
View Structure
6
1198970-1199152
(+)
lysine
1199267-1200869 (+)
VC1131
VC1131
Single gene
DOOR ID:
1396116
VC1131
View Structure
7
232124-232296
(-)
lysine
230464-232054 (-)
VCA0213
VCA0213
Single gene
DOOR ID:
1396854
VCA0213
View Structure
8
414256-414433
(-)
lysine
412789-414145 (-)
VC0391
VC0391
Single gene
DOOR ID:
1396744
VC0391
View Structure
9
1093019-1093158
(+)
MOCO
1094195-1094708 (+)
VC1025
VC1025
Operon
DOOR ID:
11497
VC1024,
VC1025,
VC1026,
VC1027,
VC1028
View Structure
10
1374911-1375021
(+)
TPP
1375080-1375929 (+)
VC1296
VC1296
Single gene
DOOR ID:
1396191
VC1296
View Structure
11
2722400-2722537
(-)
TPP
2721343-2722336 (-)
tbpA
VC2539
Operon
DOOR ID:
11796
VC2537,
VC2538,
VC2539,
VC2540,
VC2541,
VC2542
View Structure
12
59789-59887
(+)
TPP
59987-61925 (+)
VC0061
VC0061
Operon
DOOR ID:
11309
VC0061,
VC0062,
VC0063,
VC0064,
VC0065,
VC0066
View Structure
13
1786702-1786871
(+)
ykoK
1786970-1788326 (+)
VC1655
VC1655
Single gene
DOOR ID:
1396320
VC1655
View Structure
14
20081-20190
(+)
yybP-ykoY
20234-20837 (+)
VC0022
VC0022
Single gene
DOOR ID:
1395706
VC0022
View Structure
Genome:
Vibrio cholerae O1 biovar El Tor str. N16961
(
NC_002505.1
);
Taxonomy:
Gammaproteobacteria
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