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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1806459-1806545
(-)
c-di-GMP-I
1805757-1806345 (-)
VCD_002657
VCD_002657
single gene
DOOR ID:
2571740
VCD_002657
View Structure
2
590472-590578
(-)
c-di-GMP-I
588896-590435 (-)
VCD_000513
VCD_000513
single gene
DOOR ID:
2570863
VCD_000513
View Structure
3
655448-655651
(+)
cobalamin
655694-657530 (+)
VCD_001612
VCD_001612
Single gene
DOOR ID:
2571346
VCD_001612
View Structure
4
334247-334385
(+)
FMN
334499-335156 (+)
ribB
VCD_000280
Single gene
DOOR ID:
2570726
VCD_000280
View Structure
5
2123546-2123645
(+)
glycine
2123737-2125114 (+)
VCD_002925
VCD_002925
Single gene
DOOR ID:
2571838
VCD_002925
View Structure
6
225633-225810
(+)
lysine
225920-227276 (+)
VCD_001232
VCD_001232
Single gene
DOOR ID:
2571213
VCD_001232
View Structure
7
2464649-2464831
(-)
lysine
2462931-2464533 (-)
VCD_003211
VCD_003211
Single gene
DOOR ID:
2571970
VCD_003211
View Structure
8
41295-41467
(+)
lysine
41536-43126 (+)
VCD_000040
VCD_000040
Single gene
DOOR ID:
2570608
VCD_000040
View Structure
9
2570644-2570783
(-)
MOCO
2569093-2569606 (-)
VCD_003315
VCD_003315
Operon
DOOR ID:
559143
VCD_003312,
VCD_003313,
VCD_003314,
VCD_003315,
VCD_003316
View Structure
10
2288780-2288890
(-)
TPP
2287871-2288720 (-)
VCD_003055
VCD_003055
Single gene
DOOR ID:
2571896
VCD_003055
View Structure
11
570120-570218
(+)
TPP
570318-572256 (+)
VCD_001529
VCD_001529
Operon
DOOR ID:
558803
VCD_001529,
VCD_001530,
VCD_001531,
VCD_001532,
VCD_001533,
VCD_001534
View Structure
12
872126-872263
(+)
TPP
872326-873319 (+)
tbpA
VCD_001821
Operon
DOOR ID:
558857
VCD_001821,
VCD_001822,
VCD_001823
View Structure
13
1880368-1880537
(-)
ykoK
1878912-1880268 (-)
VCD_002723
VCD_002723
Single gene
DOOR ID:
2571769
VCD_002723
View Structure
14
530411-530520
(+)
yybP-ykoY
530612-531167 (+)
VCD_001490
VCD_001490
Single gene
DOOR ID:
2571294
VCD_001490
View Structure
Genome:
Vibrio cholerae MJ-1236
(
NC_012668.1
);
Taxonomy:
Gammaproteobacteria
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