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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1121738-1121947
(-)
cobalamin
1119527-1121663 (-)
nrdD
Anaerobic ribonucleoside-triphosphate reductase
BFO_1030
Operon
DOOR ID:
1322885
BFO_1030,
BFO_1029
View Structure
2
1583080-1583291
(+)
cobalamin
1583379-1585047 (+)
BFO_1478
BFO_1478
Operon
DOOR ID:
1322992
BFO_1479,
BFO_1478
View Structure
3
1587520-1587730
(+)
cobalamin
1587994-1589455 (+)
abfD
Gamma-aminobutyrate metabolism dehydratase/isomerase
BFO_1484
Operon
DOOR ID:
1322993
BFO_1491,
BFO_1490,
BFO_1489,
BFO_1488,
BFO_1487,
BFO_1486,
BFO_1485,
BFO_1484
View Structure
4
18559-18754
(+)
cobalamin
18764-19940 (+)
BFO_0014
Putative lipoprotein
BFO_0014
Operon
DOOR ID:
1322661
BFO_0016,
BFO_0015,
BFO_0014
View Structure
5
2380407-2380603
(-)
cobalamin
2377920-2380281 (-)
BFO_2217
TonB-dependent receptor
BFO_2217
Operon
DOOR ID:
1323140
BFO_2215,
BFO_2216,
BFO_2217
View Structure
6
3314364-3314569
(+)
cobalamin
3314607-3316620 (+)
BFO_3283
TonB-dependent receptor
BFO_3283
Single gene
DOOR ID:
3335591
BFO_3283
View Structure
7
2637249-2637344
(+)
TPP
2637398-2639597 (+)
BFO_2605
TonB-dependent receptor plug domain protein
BFO_2605
Single gene
DOOR ID:
3335394
BFO_2605
View Structure
Genome:
Tannerella forsythia ATCC 43037
(
NC_016610.1
);
Taxonomy:
Bacteroidetes/Chlorobi group
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