RiboswitchDB

Genome: Streptococcus mutans UA159 (NC_004350.2); Taxonomy: Firmicutes

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

1615112-1615325 (-)

FMN

1614369-1614996 (-)

SMU_1703c

Riboflavin transporter

Operon

DOOR ID: 71569

SMU_1702c,
SMU_1703c

2

1115962-1116047 (+)

glycine

1116157-1117522 (+)

SMU_1175

Putative sodium/amino acid (Alanine) symporter

Single gene

DOOR ID: 1528896

SMU_1175

3

559640-559730 (-)

THF

559024-559585 (-)

SMU_600c

Folate transporter FolT (Folate ECF transporter S component FolT)

Single gene

DOOR ID: 1528706

SMU_600c

4

666070-666170 (-)

TPP

665445-666060 (-)

SMU_706c

Single gene

DOOR ID: 1528752

SMU_706c

a:5:{i:0;a:19:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";i:18;s:9:"Structure";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_004350.2";i:2;s:27:"Streptococcus mutans UA159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1615112-1615325";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1614369-1614996";i:10;s:1:"-";i:11;s:9:"SMU_1703c";i:12;s:22:"Riboflavin transporter";i:13;s:9:"SMU_1703c";i:14;s:6:"Operon";i:15;s:5:"71569";i:16;s:20:"SMU_1702c; SMU_1703c";i:17;s:1:"
";i:18;N;}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004350.2";i:2;s:27:"Streptococcus mutans UA159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1115962-1116047";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1116157-1117522";i:10;s:1:"+";i:11;s:8:"SMU_1175";i:12;s:46:"Putative sodium/amino acid (Alanine) symporter";i:13;s:8:"SMU_1175";i:14;s:11:"Single gene";i:15;s:7:"1528896";i:16;s:8:"SMU_1175";i:17;s:1:"
";i:18;N;}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004350.2";i:2;s:27:"Streptococcus mutans UA159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"559640-559730";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"559024-559585";i:10;s:1:"-";i:11;s:8:"SMU_600c";i:12;s:65:"Folate transporter FolT (Folate ECF transporter S component FolT)";i:13;s:8:"SMU_600c";i:14;s:11:"Single gene";i:15;s:7:"1528706";i:16;s:8:"SMU_600c";i:17;s:1:"
";i:18;N;}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004350.2";i:2;s:27:"Streptococcus mutans UA159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"666070-666170";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"665445-666060";i:10;s:1:"-";i:11;s:8:"SMU_706c";i:12;s:0:"";i:13;s:8:"SMU_706c";i:14;s:11:"Single gene";i:15;s:7:"1528752";i:16;s:8:"SMU_706c";i:17;s:1:"
";i:18;N;}}