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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1522882-1523027
(-)
FMN
1522227-1522827 (-)
gbs1473
Riboflavin transporter
gbs1473
Operon
DOOR ID:
71977
gbs1472,
gbs1473
View Structure
2
784995-785109
(+)
FMN
785287-786412 (+)
gbs0767
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
gbs0767
Operon
DOOR ID:
71821
gbs0767,
gbs0768,
gbs0769,
gbs0770
View Structure
3
1250640-1250772
(+)
glycine
1250918-1252275 (+)
gbs1212
gbs1212
Operon
DOOR ID:
71911
gbs1212,
gbs1213
View Structure
4
600152-600196
(-)
PreQ1
599024-600017 (-)
gbs0574
gbs0574
Operon
DOOR ID:
71780
gbs0573,
gbs0574
View Structure
5
891258-891371
(+)
preQ1-II
892017-893976 (+)
ligA
DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])
gbs0868
Operon
DOOR ID:
71840
gbs0868,
gbs0869,
gbs0870
View Structure
6
1163395-1163490
(-)
purine
1162709-1163304 (-)
gbs1117
Xanthine phosphoribosyltransferase (XPRTase) (2)
gbs1117
Operon
DOOR ID:
71897
gbs1116,
gbs1117
View Structure
7
860206-860304
(-)
TPP
859548-860175 (-)
gbs0835
Energy-coupled thiamine transporter ThiT (Thiamine transporter)
gbs0835
Single gene
DOOR ID:
1529477
gbs0835
View Structure
8
879269-879358
(+)
TPP
879500-880080 (+)
gbs0853
gbs0853
Operon
DOOR ID:
71837
gbs0853,
gbs0854,
gbs0855,
gbs0856
View Structure
Genome:
Streptococcus agalactiae NEM316
(
NC_004368.1
);
Taxonomy:
Firmicutes
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