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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
2263352-2263502
(-)
cobalamin
2261847-2262276 (-)
PA14_25930
Putative cobalamin biosynthesis protein
PA14_25930
Operon
DOOR ID:
225309
PA14_25920,
PA14_25930
View Structure
2
2263561-2263753
(+)
cobalamin
2263798-2264926 (+)
cobW
Putative cobalamin biosynthesis protein cobW
PA14_25960
Operon
DOOR ID:
225310
PA14_25960,
PA14_25970
View Structure
3
2303609-2303814
(-)
cobalamin
2301353-2303510 (-)
PA14_26420
Putative TonB-dependent receptor
PA14_26420
Operon
DOOR ID:
225316
PA14_26360,
PA14_26390,
PA14_26400,
PA14_26420
View Structure
4
2307921-2308172
(+)
cobalamin
2309628-2310255 (+)
cobH
Precorrin isomerase CobH
PA14_26500
Operon
DOOR ID:
225318
PA14_26485,
PA14_26500,
PA14_26510,
PA14_26530
View Structure
5
4252888-4253096
(-)
cobalamin
4250941-4252792 (-)
btuB
Putative tonB-dependent receptor
PA14_47800
Operon
DOOR ID:
225665
PA14_47650,
PA14_47660,
PA14_47670,
PA14_47680,
PA14_47690,
PA14_47720,
PA14_47730,
PA14_47750,
PA14_47760,
PA14_47790,
PA14_47800
View Structure
6
5078127-5078189
(-)
fluoride
5077678-5078062 (-)
crcB
Putative fluoride ion transporter CrcB
PA14_56980
Operon
DOOR ID:
225811
PA14_56970,
PA14_56980
View Structure
7
989638-989800
(+)
FMN
989983-990643 (+)
ribC
Riboflavin synthase alpha chain
PA14_11410
Operon
DOOR ID:
225085
PA14_11410,
PA14_11420,
PA14_11430,
PA14_11450,
PA14_11460,
PA14_11470,
PA14_11480,
PA14_11490
View Structure
8
498889-498994
(-)
SAH
497456-498866 (-)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
PA14_05620
Operon
DOOR ID:
224985
PA14_05590,
PA14_05600,
PA14_05620
View Structure
9
5855131-5855267
(-)
TPP
5853157-5855041 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PA14_65740
Single gene
DOOR ID:
1881789
PA14_65740
View Structure
10
2303972-2304137
(+)
yybP-ykoY
2304146-2304716 (+)
yebN
Putative manganese efflux pump MntP
PA14_26450
Single gene
DOOR ID:
1880961
PA14_26450
View Structure
11
5468951-5469074
(+)
yybP-ykoY
5469164-5469743 (+)
PA14_61260
Putative membrane protein
PA14_61260
Single gene
DOOR ID:
1881665
PA14_61260
View Structure
Genome:
Pseudomonas aeruginosa UCBPP-PA14
(
NC_008463.1
);
Taxonomy:
Gammaproteobacteria
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PA14_47660; PA14_47670; PA14_47680; PA14_47690; PA14_47720; PA14_47730; PA14_47750; PA14_47760; PA14_47790; PA14_47800";i:17;s:1:" ";i:18;N;}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5078127-5078189";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"5077678-5078062";i:10;s:1:"-";i:11;s:4:"crcB";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"PA14_56980";i:14;s:6:"Operon";i:15;s:6:"225811";i:16;s:22:"PA14_56970; PA14_56980";i:17;s:1:" ";i:18;N;}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"989638-989800";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"989983-990643";i:10;s:1:"+";i:11;s:4:"ribC";i:12;s:31:"Riboflavin synthase alpha chain";i:13;s:10:"PA14_11410";i:14;s:6:"Operon";i:15;s:6:"225085";i:16;s:94:"PA14_11410; PA14_11420; PA14_11430; PA14_11450; PA14_11460; PA14_11470; 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thiamine diphosphate biosynthetic process [GO:0009229] ";i:18;N;}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2303972-2304137";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2304146-2304716";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"PA14_26450";i:14;s:11:"Single gene";i:15;s:7:"1880961";i:16;s:10:"PA14_26450";i:17;s:27:"ion transport [GO:0006811] ";i:18;N;}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5468951-5469074";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"5469164-5469743";i:10;s:1:"+";i:11;s:10:"PA14_61260";i:12;s:25:"Putative membrane protein";i:13;s:10:"PA14_61260";i:14;s:11:"Single gene";i:15;s:7:"1881665";i:16;s:10:"PA14_61260";i:17;s:1:" ";i:18;N;}}