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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
2269200-2269348
(-)
cobalamin
2268917-2269100 (-)
cbtB
Cobalt transporter subunit CbtB
PSPA7_2216
Operon
DOOR ID:
330813
PSPA7_2215,
PSPA7_2216
View Structure
2
2269407-2269598
(+)
cobalamin
2269717-2270770 (+)
cobW
Cobalamin biosynthesis protein CobW
PSPA7_2218
Operon
DOOR ID:
330814
PSPA7_2218,
PSPA7_2219
View Structure
3
2299047-2299252
(-)
cobalamin
2296785-2298948 (-)
PSPA7_2243
Probable TonB-dependent receptor
PSPA7_2243
Operon
DOOR ID:
330818
PSPA7_2240,
PSPA7_2241,
PSPA7_2242,
PSPA7_2243
View Structure
4
2302864-2303120
(+)
cobalamin
2303207-2304578 (+)
cobG
Precorrin-3B synthase (3)
PSPA7_2248
Operon
DOOR ID:
330820
PSPA7_2248,
PSPA7_2249,
PSPA7_2250,
PSPA7_2251
View Structure
5
4254634-4254842
(-)
cobalamin
4252684-4254535 (-)
btuB
TonB-dependent vitamin B12 receptor
PSPA7_4119
Operon
DOOR ID:
331182
PSPA7_4108,
PSPA7_4110,
PSPA7_4111,
PSPA7_4112,
PSPA7_4113,
PSPA7_4114,
PSPA7_4115,
PSPA7_4116,
PSPA7_4117,
PSPA7_4118,
PSPA7_4119
View Structure
6
5109568-5109630
(-)
fluoride
5109116-5109500 (-)
PSPA7_4954
Putative fluoride ion transporter CrcB
PSPA7_4954
Single gene
DOOR ID:
2089614
PSPA7_4954
View Structure
7
1046600-1046762
(+)
FMN
1046945-1047605 (+)
ribE
Riboflavin synthase; alpha subunit
PSPA7_1046
Operon
DOOR ID:
330589
PSPA7_1046,
PSPA7_1047,
PSPA7_1048,
PSPA7_1049,
PSPA7_1050,
PSPA7_1051,
PSPA7_1052,
PSPA7_1053
View Structure
8
4972947-4973054
(-)
SAH
4972010-4972442 (-)
PSPA7_4831
PSPA7_4831
Single gene
DOOR ID:
2089934
PSPA7_4831
View Structure
9
550494-550599
(-)
SAH
549061-550459 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
PSPA7_0532
Operon
DOOR ID:
330483
PSPA7_0530,
PSPA7_0531,
PSPA7_0532,
PSPA7_0533
View Structure
10
5872905-5873041
(-)
TPP
5870931-5872815 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PSPA7_5702
Single gene
DOOR ID:
2089205
PSPA7_5702
View Structure
11
2299406-2299530
(+)
yybP-ykoY
2299712-2300441 (-)
PSPA7_2245
Precorrin-6x reductase CbiJ/CobK (4)
PSPA7_2245
Operon
DOOR ID:
330819
PSPA7_2245,
PSPA7_2246,
PSPA7_2247
View Structure
12
5437436-5437559
(+)
yybP-ykoY
5437649-5438228 (+)
PSPA7_5275
PSPA7_5275
Single gene
DOOR ID:
2089977
PSPA7_5275
View Structure
Genome:
Pseudomonas aeruginosa PA7
(
NC_009656.1
);
Taxonomy:
Gammaproteobacteria
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PSPA7_4110; PSPA7_4111; PSPA7_4112; PSPA7_4113; PSPA7_4114; PSPA7_4115; PSPA7_4116; PSPA7_4117; PSPA7_4118; PSPA7_4119";i:17;s:1:" ";i:18;N;}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009656.1";i:2;s:27:"Pseudomonas aeruginosa PA7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5109568-5109630";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"5109116-5109500";i:10;s:1:"-";i:11;s:10:"PSPA7_4954";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"PSPA7_4954";i:14;s:11:"Single gene";i:15;s:7:"2089614";i:16;s:10:"PSPA7_4954";i:17;s:1:" ";i:18;N;}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009656.1";i:2;s:27:"Pseudomonas aeruginosa PA7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1046600-1046762";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1046945-1047605";i:10;s:1:"+";i:11;s:4:"ribE";i:12;s:35:"Riboflavin synthase; alpha subunit ";i:13;s:10:"PSPA7_1046";i:14;s:6:"Operon";i:15;s:6:"330589";i:16;s:94:"PSPA7_1046; PSPA7_1047; PSPA7_1048; PSPA7_1049; PSPA7_1050; PSPA7_1051; PSPA7_1052; 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