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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1262789-1263007
(-)
cobalamin
1260376-1262656 (-)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MRA_1142
Single gene
DOOR ID:
2065342
MRA_1142
View Structure
2
311047-311220
(-)
cobalamin
309238-310801 (-)
MRA_0265
PPE family protein
MRA_0265
Operon
DOOR ID:
318058
MRA_0263,
MRA_0264,
MRA_0265
View Structure
3
2085545-2085642
(+)
glycine
2085808-2088634 (+)
gcvB
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MRA_1843
Operon
DOOR ID:
318423
MRA_1842,
MRA_1842A,
MRA_1843
View Structure
4
80562-80652
(-)
glycine
78976-80254 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
MRA_0072
Operon
DOOR ID:
318019
MRA_0071,
MRA_0072
View Structure
5
3736812-3736931
(+)
SAM-IV
3736967-3738317 (+)
metC
O-acetylhomoserine sulfhydrylase
MRA_3381
Operon
DOOR ID:
318778
MRA_3381,
MRA_3382,
MRA_3383
View Structure
6
502357-502467
(+)
TPP
503476-503683 (+)
thiS
Sulfur carrier protein ThiS
MRA_0422
Operon
DOOR ID:
318092
MRA_0421,
MRA_0422,
MRA_0423
View Structure
7
511526-511636
(-)
TPP
509067-509865 (-)
thiD
Phosphomethylpyrimidine kinase
MRA_0428
Operon
DOOR ID:
318093
MRA_0427,
MRA_0428,
MRA_0429
View Structure
8
966851-967073
(-)
ydaO-yuaA
965617-966841 (-)
rpfA
Putative resuscitation-promoting factor RpfA
MRA_0874
Single gene
DOOR ID:
2065234
MRA_0874
View Structure
9
1737026-1737195
(+)
ykoK
1737492-1737729 (+)
MRA_1547
MRA_1547
Single gene
DOOR ID:
2065494
MRA_1547
View Structure
10
2057527-2057701
(+)
ykoK
2058003-2058303 (+)
MRA_1818
PE family protein
MRA_1818
Operon
DOOR ID:
318418
MRA_1818,
MRA_1819
View Structure
Genome:
Mycobacterium tuberculosis H37Ra
(
NC_009525.1
);
Taxonomy:
Actinobacteria
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MRA_0428; MRA_0429";i:17;s:43:"thiamine biosynthetic process [GO:0009228] ";i:18;N;}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"966851-967073";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"965617-966841";i:10;s:1:"-";i:11;s:4:"rpfA";i:12;s:44:"Putative resuscitation-promoting factor RpfA";i:13;s:8:"MRA_0874";i:14;s:11:"Single gene";i:15;s:7:"2065234";i:16;s:8:"MRA_0874";i:17;s:1:" ";i:18;N;}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1737026-1737195";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1737492-1737729";i:10;s:1:"+";i:11;s:8:"MRA_1547";i:12;s:0:"";i:13;s:8:"MRA_1547";i:14;s:11:"Single gene";i:15;s:7:"2065494";i:16;s:8:"MRA_1547";i:17;s:1:" ";i:18;N;}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2057527-2057701";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2058003-2058303";i:10;s:1:"+";i:11;s:8:"MRA_1818";i:12;s:17:"PE family protein";i:13;s:8:"MRA_1818";i:14;s:6:"Operon";i:15;s:6:"318418";i:16;s:18:"MRA_1818; MRA_1819";i:17;s:1:" ";i:18;N;}}
