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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1207866-1208107
(-)
cobalamin
1205459-1207730 (-)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MAV_1262
Single gene
DOOR ID:
1914411
MAV_1262
View Structure
2
1283197-1283340
(-)
cobalamin
1281366-1283034 (-)
MAV_1329
PPE family protein
MAV_1329
Single gene
DOOR ID:
1914261
MAV_1329
View Structure
3
2916239-2916336
(-)
glycine
2913236-2916062 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MAV_2884
Single gene
DOOR ID:
1915407
MAV_2884
View Structure
4
2398088-2398167
(+)
SAH
2398181-2401955 (+)
metH
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
MAV_2379
Single gene
DOOR ID:
1914626
MAV_2379
View Structure
5
4445983-4446105
(+)
SAM-IV
4446270-4447641 (+)
MAV_4315
O-acetylhomoserine sulfhydrylase
MAV_4315
Operon
DOOR ID:
242222
MAV_4315,
MAV_4316,
MAV_4317
View Structure
6
4856111-4856221
(+)
TPP
4857831-4858680 (+)
thiD
Phosphomethylpyrimidine kinase
MAV_4732
Operon
DOOR ID:
242311
MAV_4731,
MAV_4732,
MAV_4733,
MAV_4734,
MAV_4735
View Structure
7
4870260-4870369
(-)
TPP
4869004-4869202 (-)
thiS
Thiamine biosynthesis protein ThiS
MAV_4745
Operon
DOOR ID:
242314
MAV_4743,
MAV_4744,
MAV_4745,
MAV_4746
View Structure
8
933340-933552
(-)
ydaO-yuaA
932552-933257 (-)
MAV_0996
Resuscitation-promoting factor RpfA
MAV_0996
Single gene
DOOR ID:
1915543
MAV_0996
View Structure
9
2148364-2148471
(-)
ykkC-yxkD
2147595-2148324 (-)
MAV_2141
Probable membrane transporter protein
MAV_2141
Single gene
DOOR ID:
1914589
MAV_2141
View Structure
10
2947346-2947521
(-)
ykoK
2946763-2947063 (-)
MAV_2915
PE family protein
MAV_2915
Operon
DOOR ID:
241926
MAV_2912,
MAV_2913,
MAV_2914,
MAV_2915
View Structure
11
3338199-3338383
(-)
ykoK
3337668-3337905 (-)
MAV_3236
MAV_3236
Single gene
DOOR ID:
1914485
MAV_3236
View Structure
12
5347431-5347601
(-)
ykoK
5347179-5347314 (+)
MAV_5199
MAV_5199
Single gene
DOOR ID:
1914354
MAV_5199
View Structure
Genome:
Mycobacterium avium 104
(
NC_008595.1
);
Taxonomy:
Actinobacteria
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MAV_4316; MAV_4317";i:17;s:51:"cellular amino acid metabolic process [GO:0006520] ";i:18;N;}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008595.1";i:2;s:24:"Mycobacterium avium 104 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4856111-4856221";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4857831-4858680";i:10;s:1:"+";i:11;s:4:"thiD";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:8:"MAV_4732";i:14;s:6:"Operon";i:15;s:6:"242311";i:16;s:48:"MAV_4731; MAV_4732; MAV_4733; MAV_4734; MAV_4735";i:17;s:43:"thiamine biosynthetic process [GO:0009228] ";i:18;N;}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008595.1";i:2;s:24:"Mycobacterium avium 104 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4870260-4870369";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4869004-4869202";i:10;s:1:"-";i:11;s:4:"thiS";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:8:"MAV_4745";i:14;s:6:"Operon";i:15;s:6:"242314";i:16;s:38:"MAV_4743; MAV_4744; MAV_4745; MAV_4746";i:17;s:1:" ";i:18;N;}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008595.1";i:2;s:24:"Mycobacterium avium 104 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"933340-933552";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"932552-933257";i:10;s:1:"-";i:11;s:8:"MAV_0996";i:12;s:35:"Resuscitation-promoting factor RpfA";i:13;s:8:"MAV_0996";i:14;s:11:"Single gene";i:15;s:7:"1915543";i:16;s:8:"MAV_0996";i:17;s:1:" ";i:18;N;}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008595.1";i:2;s:24:"Mycobacterium avium 104 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2148364-2148471";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2147595-2148324";i:10;s:1:"-";i:11;s:8:"MAV_2141";i:12;s:37:"Probable membrane transporter protein";i:13;s:8:"MAV_2141";i:14;s:11:"Single gene";i:15;s:7:"1914589";i:16;s:8:"MAV_2141";i:17;s:1:" ";i:18;N;}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008595.1";i:2;s:24:"Mycobacterium avium 104 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2947346-2947521";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2946763-2947063";i:10;s:1:"-";i:11;s:8:"MAV_2915";i:12;s:17:"PE family protein";i:13;s:8:"MAV_2915";i:14;s:6:"Operon";i:15;s:6:"241926";i:16;s:38:"MAV_2912; MAV_2913; MAV_2914; MAV_2915";i:17;s:1:" ";i:18;N;}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008595.1";i:2;s:24:"Mycobacterium avium 104 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3338199-3338383";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"3337668-3337905";i:10;s:1:"-";i:11;s:8:"MAV_3236";i:12;s:0:"";i:13;s:8:"MAV_3236";i:14;s:11:"Single gene";i:15;s:7:"1914485";i:16;s:8:"MAV_3236";i:17;s:1:" ";i:18;N;}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008595.1";i:2;s:24:"Mycobacterium avium 104 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5347431-5347601";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"5347179-5347314";i:10;s:1:"+";i:11;s:8:"MAV_5199";i:12;s:0:"";i:13;s:8:"MAV_5199";i:14;s:11:"Single gene";i:15;s:7:"1914354";i:16;s:8:"MAV_5199";i:17;s:1:" ";i:18;N;}}
