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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
931327-931473
(+)
FMN
931479-932049 (+)
HMPREF0424_0823
Riboflavin transporter
HMPREF0424_0823
Operon
DOOR ID:
650120
HMPREF0424_0823,
HMPREF0424_0824
View Structure
2
1097474-1097660
(-)
lysine
1095932-1097423 (-)
lysP
Amino acid permease
HMPREF0424_0954
Single gene
DOOR ID:
2754639
HMPREF0424_0954
View Structure
3
1012526-1012631
(+)
TPP
1015616-1016153 (-)
HMPREF0424_0893
Peptidyl-prolyl cis-trans isomerase (PPIase)
HMPREF0424_0893
Single gene
DOOR ID:
2754614
HMPREF0424_0893
View Structure
4
1344573-1344682
(+)
TPP
1346343-1347264 (-)
thiD
Phosphomethylpyrimidine kinase
HMPREF0424_1159
Single gene
DOOR ID:
2754711
HMPREF0424_1159
View Structure
5
1536375-1536478
(-)
TPP
1534982-1535189 (-)
thiS_2
Thiamine biosynthesis protein ThiS
HMPREF0424_1285
Single gene
DOOR ID:
2754767
HMPREF0424_1285
View Structure
6
439591-439714
(+)
TPP
439879-440488 (+)
HMPREF0424_0412
HMPREF0424_0412
Operon
DOOR ID:
650042
HMPREF0424_0412,
HMPREF0424_0414
View Structure
7
745015-745139
(-)
TPP
743056-744055 (-)
HMPREF0424_0659
HMPREF0424_0659
Single gene
DOOR ID:
2754523
HMPREF0424_0659
View Structure
8
871659-871748
(+)
TPP
871920-873162 (+)
HMPREF0424_0773
Allantoate amidohydrolase
HMPREF0424_0773
Single gene
DOOR ID:
2754569
HMPREF0424_0773
View Structure
9
370933-371094
(+)
ykoK
371197-371344 (+)
HMPREF0424_0345
HMPREF0424_0345
Single gene
DOOR ID:
2754378
HMPREF0424_0345
View Structure
Genome:
Gardnerella vaginalis 409-05
(
NC_013721.1
);
Taxonomy:
Actinobacteria
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