About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
4193050-4193240
(+)
cobalamin
4193304-4195149 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
EcHS_A4200
Operon
DOOR ID:
352377
EcHS_A4200,
EcHS_A4201
View Structure
2
3229401-3229549
(-)
FMN
3228643-3229297 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EcHS_A3219
Single gene
DOOR ID:
2132401
EcHS_A3219
View Structure
3
4265274-4265470
(-)
lysine
4263832-4265182 (-)
lysC
EcHS_A4263
Single gene
DOOR ID:
2132739
EcHS_A4263
View Structure
4
4502631-4502746
(+)
Mg sensor
4502839-4505536 (+)
mgtA
EcHS_A4497
Single gene
DOOR ID:
2132840
EcHS_A4497
View Structure
5
843515-843659
(+)
MOCO
844657-845170 (+)
moaB
EcHS_A0836
Operon
DOOR ID:
351743
EcHS_A0835,
EcHS_A0836,
EcHS_A0837,
EcHS_A0838,
EcHS_A0839
View Structure
6
2227685-2227781
(-)
TPP
2226861-2227650 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EcHS_A2240
Operon
DOOR ID:
351987
EcHS_A2237,
EcHS_A2238,
EcHS_A2239,
EcHS_A2240
View Structure
7
4225762-4225862
(-)
TPP
4223785-4225681 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EcHS_A4228
Operon
DOOR ID:
352382
EcHS_A4223,
EcHS_A4224,
EcHS_A4225,
EcHS_A4226,
EcHS_A4227,
EcHS_A4228
View Structure
8
77266-77365
(-)
TPP
76251-77235 (-)
tbpA
EcHS_A0072
Operon
DOOR ID:
351589
EcHS_A0070,
EcHS_A0071,
EcHS_A0072
View Structure
9
1924435-1924536
(+)
yybP-ykoY
1924666-1925233 (+)
EcHS_A1911
Probable manganese efflux pump MntP
EcHS_A1911
Single gene
DOOR ID:
2131997
EcHS_A1911
View Structure
Genome:
Escherichia coli HS
(
NC_009800.1
);
Taxonomy:
Gammaproteobacteria
a:10:{i:0;a:19:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";i:18;s:9:"Structure";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4193050-4193240";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4193304-4195149";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"EcHS_A4200";i:14;s:6:"Operon";i:15;s:6:"352377";i:16;s:22:"EcHS_A4200; EcHS_A4201";i:17;s:27:"ion transport [GO:0006811] ";i:18;N;}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3229401-3229549";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3228643-3229297";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"EcHS_A3219";i:14;s:11:"Single gene";i:15;s:7:"2132401";i:16;s:10:"EcHS_A3219";i:17;s:45:"riboflavin biosynthetic process [GO:0009231] ";i:18;N;}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4265274-4265470";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4263832-4265182";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:10:"EcHS_A4263";i:14;s:11:"Single gene";i:15;s:7:"2132739";i:16;s:10:"EcHS_A4263";i:17;s:1:" ";i:18;N;}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4502631-4502746";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4502839-4505536";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:10:"EcHS_A4497";i:14;s:11:"Single gene";i:15;s:7:"2132840";i:16;s:10:"EcHS_A4497";i:17;s:1:" ";i:18;N;}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"843515-843659";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"844657-845170";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:10:"EcHS_A0836";i:14;s:6:"Operon";i:15;s:6:"351743";i:16;s:58:"EcHS_A0835; EcHS_A0836; EcHS_A0837; EcHS_A0838; EcHS_A0839";i:17;s:1:" ";i:18;N;}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2227685-2227781";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2226861-2227650";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"EcHS_A2240";i:14;s:6:"Operon";i:15;s:6:"351987";i:16;s:46:"EcHS_A2237; EcHS_A2238; EcHS_A2239; EcHS_A2240";i:17;s:99:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229] ";i:18;N;}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4225762-4225862";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4223785-4225681";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"EcHS_A4228";i:14;s:6:"Operon";i:15;s:6:"352382";i:16;s:70:"EcHS_A4223; EcHS_A4224; EcHS_A4225; EcHS_A4226; EcHS_A4227; EcHS_A4228";i:17;s:99:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229] ";i:18;N;}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"77266-77365";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"76251-77235";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:10:"EcHS_A0072";i:14;s:6:"Operon";i:15;s:6:"351589";i:16;s:34:"EcHS_A0070; EcHS_A0071; EcHS_A0072";i:17;s:1:" ";i:18;N;}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1924435-1924536";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1924666-1925233";i:10;s:1:"+";i:11;s:10:"EcHS_A1911";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:10:"EcHS_A1911";i:14;s:11:"Single gene";i:15;s:7:"2131997";i:16;s:10:"EcHS_A1911";i:17;s:27:"ion transport [GO:0006811] ";i:18;N;}}
