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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
4375498-4375688
(+)
cobalamin
4375752-4377597 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ECP_4183
Operon
DOOR ID:
206515
ECP_4183,
ECP_4184
View Structure
2
3303297-3303446
(-)
FMN
3302539-3303193 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECP_3136
Single gene
DOOR ID:
1834343
ECP_3136
View Structure
3
4448705-4448901
(-)
lysine
4447263-4448613 (-)
ECP_4242
ECP_4242
Single gene
DOOR ID:
1834694
ECP_4242
View Structure
4
4704294-4704409
(+)
Mg sensor
4704502-4707199 (+)
ECP_4492
ECP_4492
Single gene
DOOR ID:
1834790
ECP_4492
View Structure
5
832790-832934
(+)
MOCO
833932-834445 (+)
ECP_0796
ECP_0796
Operon
DOOR ID:
205839
ECP_0795,
ECP_0796,
ECP_0797,
ECP_0798,
ECP_0799
View Structure
6
2225832-2225928
(-)
TPP
2225008-2225797 (-)
ECP_2142
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECP_2142
Operon
DOOR ID:
206084
ECP_2139,
ECP_2140,
ECP_2141,
ECP_2142
View Structure
7
4407097-4407197
(-)
TPP
4405120-4407016 (-)
ECP_4207
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECP_4207
Operon
DOOR ID:
206520
ECP_4202,
ECP_4203,
ECP_4204,
ECP_4205,
ECP_4206,
ECP_4207
View Structure
8
78053-78152
(-)
TPP
77038-78022 (-)
tbpA
ECP_0071
Operon
DOOR ID:
205693
ECP_0069,
ECP_0070,
ECP_0071
View Structure
9
1817306-1817407
(+)
yybP-ykoY
1817537-1818104 (+)
ECP_1764
Probable manganese efflux pump MntP
ECP_1764
Single gene
DOOR ID:
1833916
ECP_1764
View Structure
Genome:
Escherichia coli 536
(
NC_008253.1
);
Taxonomy:
Gammaproteobacteria
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