Genome: Clostridium difficile CD196 (NC_013315.1); Taxonomy: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 1512611-1512707 (-)c-di-GMP-I1512380-1512557 (-)CD196_1294

Uncharacterized protein		CD196_1294single gene

DOOR ID: 2695657		CD196_1294 View Structure
2 2143958-2144047 (+)c-di-GMP-I2144390-2144747 (-)CD196_1862

Putative transcriptional regulator		CD196_1862single gene

DOOR ID: 2695879		CD196_1862 View Structure
3 2156353-2156446 (-)c-di-GMP-I2155784-2156270 (-)CD196_1871

Uncharacterized protein		CD196_1871single gene

DOOR ID: 2695888		CD196_1871 View Structure
4 2157412-2157509 (+)c-di-GMP-I2157965-2158166 (+)cspC

Cold shock protein		CD196_1872single gene

DOOR ID: 2695889		CD196_1872 View Structure
5 3096099-3096184 (-)c-di-GMP-I3090011-3095975 (-)CD196_2639

Putative exported protein		CD196_2639single gene

DOOR ID: 2696217		CD196_2639 View Structure
6 310584-310674 (+)c-di-GMP-I311080-311398 (+)flgB

Flagellar basal-body rod protein		CD196_0261operon

DOOR ID: 621204		CD196_0261,
CD196_0262,
CD196_0263,
CD196_0264,
CD196_0265,
CD196_0266,
CD196_0267,
CD196_0268,
CD196_0269,
CD196_0270,
CD196_0271,
CD196_0272,
CD196_0273,
CD196_0274,
CD196_0275,
CD196_0276,
CD196_0277,
CD196_0278,
CD196_0279,
CD196_0280,
CD196_0281,
CD196_0282,
CD196_0283,
CD196_0284		 View Structure
7 3136573-3136658 (-)c-di-GMP-I3135810-3136473 (-)CD196_2674

Putative exported protein		CD196_2674single gene

DOOR ID: 2696236		CD196_2674 View Structure
8 3750238-3750334 (+)c-di-GMP-I3751012-3751612 (+)CD196_3168

Uncharacterized protein		CD196_3168single gene

DOOR ID: 2696439		CD196_3168 View Structure
9 3139911-3139996 (-)c-di-GMP-II3136843-3139798 (-)CD196_2675

Putative collagen-binding protein		CD196_2675Single gene

DOOR ID: 2696237		CD196_2675 View Structure
10 3655773-3655856 (-)c-di-GMP-II3654515-3655193 (-)CD196_3082

Two-component response regulator		CD196_3082Operon

DOOR ID: 621769		CD196_3080,
CD196_3081,
CD196_3082		 View Structure
11 3905812-3905897 (-)c-di-GMP-II3905128-3905650 (-)CD196_3304

Pilin		CD196_3304Single gene

DOOR ID: 2696480		CD196_3304 View Structure
12 3276182-3276363 (-)cobalamin3274823-3275954 (-)CD196_2788

Putative iron ABC transporter; substrate-binding protein		CD196_2788Single gene

DOOR ID: 2696280		CD196_2788 View Structure
13 3811996-3812175 (-)cobalamin3810366-3811866 (-)cbiP

Cobyric acid synthase		CD196_3211Operon

DOOR ID: 621796		CD196_3195,
CD196_3196,
CD196_3197,
CD196_3198,
CD196_3199,
CD196_3200,
CD196_3201,
CD196_3202,
CD196_3203,
CD196_3204,
CD196_3205,
CD196_3206,
CD196_3207,
CD196_3208,
CD196_3209,
CD196_3210,
CD196_3211		 View Structure
14 395077-395269 (+)cobalamin395457-396210 (+)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CD196_0343Operon

DOOR ID: 621216		CD196_0343,
CD196_0344,
CD196_0345,
CD196_0346		 View Structure
15 704790-704866 (+)fluoride705130-706387 (+)CD196_0596

Putative chloride ion channel protein		CD196_0596Operon

DOOR ID: 621272		CD196_0596,
CD196_0597		 View Structure
16 1887657-1887778 (-)FMN1886421-1887525 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CD196_1623Operon

DOOR ID: 621474		CD196_1622,
CD196_1623		 View Structure
17 194840-194957 (+)FMN195081-195687 (+)CD196_0159

Riboflavin transporter		CD196_0159Single gene

DOOR ID: 2695226		CD196_0159 View Structure
18 3690789-3690904 (+)FMN3691078-3692449 (+)CD196_3114

Probable transporter		CD196_3114Single gene

DOOR ID: 2696412		CD196_3114 View Structure
19 161242-161421 (+)glmS161474-163307 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CD196_0132Single gene

DOOR ID: 2695215		CD196_0132 View Structure
20 1838585-1838689 (+)glycine1838898-1841373 (+)CD196_1580

Multifunctional fusion protein [Includes: Aminomethyltransferase (Glycine cleavage system P-protein subunit 1) (Glycine decarboxylase subunit 1) (Glycine dehydrogenase (aminomethyl-transferring) subunit 1)]		CD196_1580Operon

DOOR ID: 621464		CD196_1580,
CD196_1581		 View Structure
21 2476388-2476476 (+)glycine2476665-2478033 (+)CD196_2131

Putative sodium:solute symporter		CD196_2131Single gene

DOOR ID: 2696029		CD196_2131 View Structure
22 2555970-2556080 (-)glycine2555494-2555866 (-)grdX

Putative glycine reductase complex component		CD196_2198Single gene

DOOR ID: 2696056		CD196_2198 View Structure
23 1835448-1835624 (+)lysine1835767-1837498 (+)CD196_1578

Putative Na+/H+ antiporter		CD196_1578Single gene

DOOR ID: 2695770		CD196_1578 View Structure
24 2209210-2209378 (-)lysine2207934-2209128 (-)lysC

Aspartokinase 		CD196_1918Operon

DOOR ID: 621531		CD196_1917,
CD196_1918		 View Structure
25 3407424-3407603 (-)lysine3405888-3407280 (-)CD196_2891

Putative C4-dicarboxylate anaerobic carrier		CD196_2891Operon

DOOR ID: 621726		CD196_2890,
CD196_2891		 View Structure
26 3601525-3601699 (+)lysine3601871-3602873 (+)asd

Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)		CD196_3038Operon

DOOR ID: 621764		CD196_3038,
CD196_3039,
CD196_3040		 View Structure
27 1870833-1870876 (+)PreQ11870976-1871945 (+)iunH

Inosine-uridine preferring nucleoside hydrolase		CD196_1605Operon

DOOR ID: 621469		CD196_1605,
CD196_1606,
CD196_1607		 View Structure
28 2276336-2276438 (-)purine2274865-2276242 (-)CD196_1971

Putative xanthine/uracil permease		CD196_1971Single gene

DOOR ID: 2695942		CD196_1971 View Structure
29 2525006-2525107 (-)purine2524250-2524823 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		CD196_2173Operon

DOOR ID: 621580		CD196_2172,
CD196_2173		 View Structure
30 254387-254488 (+)purine254708-256244 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		CD196_0211Single gene

DOOR ID: 2695252		CD196_0211 View Structure
31 2958868-2958969 (+)purine2959041-2960385 (+)CD196_2545

Putative permease		CD196_2545Single gene

DOOR ID: 2696175		CD196_2545 View Structure
32 1222226-1222332 (+)SAM1222434-1223640 (+)hom1

Homoserine dehydrogenase (HDH) 		CD196_1025Single gene

DOOR ID: 2695551		CD196_1025 View Structure
33 1585164-1585270 (+)SAM1585360-1586341 (+)metN

Methionine import ATP-binding protein MetN 		CD196_1362Operon

DOOR ID: 621425		CD196_1362,
CD196_1363,
CD196_1364		 View Structure
34 172255-172358 (+)SAM172494-173688 (+)metE

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CD196_0142Single gene

DOOR ID: 2695220		CD196_0142 View Structure
35 1834101-1834206 (-)SAM1833190-1833988 (-)CD196_1576

Lipoprotein		CD196_1576Single gene

DOOR ID: 2695768		CD196_1576 View Structure
36 2018049-2018151 (+)SAM2018260-2019526 (+)cysD

Putative O-acetylhomoserine sulfhydrylase		CD196_1744Operon

DOOR ID: 621500		CD196_1744,
CD196_1745		 View Structure
37 1771204-1771296 (+)TPP1771395-1772190 (+)thiD

Putative phosphomethylpyrimidine kinase		CD196_1522Operon

DOOR ID: 621454		CD196_1522,
CD196_1523,
CD196_1524		 View Structure
38 1890538-1890649 (+)TPP1890676-1892092 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CD196_1625Single gene

DOOR ID: 2695787		CD196_1625 View Structure
39 2143239-2143338 (-)TPP2142817-2143108 (-)CD196_1861

CD196_1861Operon

DOOR ID: 621524		CD196_1858,
CD196_1859,
CD196_1860,
CD196_1861		 View Structure
40 2596277-2596371 (-)ykkC-yxkD2595508-2596213 (-)CD196_2235

CD196_2235Single gene

DOOR ID: 2696068		CD196_2235 View Structure
41 519848-519954 (+)ykkC-yxkD520023-520344 (+)sugE

Quaternary ammonium compound-resistance protein		CD196_0445Single gene

DOOR ID: 2695316		CD196_0445 View Structure