About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1270665-1270902
(-)
cobalamin
1270425-1270614 (-)
BS1330_I1306
BS1330_I1306
Operon
DOOR ID:
1344547
BS1330_I1300,
BS1330_I1301,
BS1330_I1302,
BS1330_I1303,
BS1330_I1304,
BS1330_I1305,
BS1330_I1306
View Structure
2
1270680-1270917
(-)
cobalamin
1270440-1270629 (-)
BR1310
BR1310
Operon
DOOR ID:
68277
BR1304,
BR1305,
BR1306,
BR1307,
BR1308,
BR1309,
BR1310
View Structure
3
1309053-1309281
(-)
cobalamin
1307033-1308896 (-)
BS1330_I1342
Iron compound TonB-dependent receptor; putative
BS1330_I1342
Operon
DOOR ID:
1344553
BS1330_I1339,
BS1330_I1340,
BS1330_I1341,
BS1330_I1342
View Structure
4
1309068-1309296
(-)
cobalamin
1307048-1308911 (-)
BR1347
BR1347
Operon
DOOR ID:
68283
BR1344,
BR1345,
BR1346,
BR1347
View Structure
5
297512-297725
(+)
cobalamin
298076-298298 (+)
nrdH
BRA0314
Operon
DOOR ID:
68499
BRA0314,
BRA0315,
BRA0316,
BRA0317
View Structure
6
297512-297725
(+)
cobalamin
298076-298298 (+)
nrdH
Glutaredoxin-like protein nrdH
BS1330_II0311
Operon
DOOR ID:
1344129
BS1330_II0311,
BS1330_II0312,
BS1330_II0313,
BS1330_II0314
View Structure
7
738425-738657
(-)
cobalamin
737190-738225 (-)
BRA0756
BRA0756
Operon
DOOR ID:
68581
BRA0754,
BRA0755,
BRA0756,
BRA0757
View Structure
8
738425-738657
(-)
cobalamin
737190-738225 (-)
BS1330_II0749
Iron compound ABC transporter; periplasmic iron compound-binding protein
BS1330_II0749
Operon
DOOR ID:
1344211
BS1330_II0747,
BS1330_II0748,
BS1330_II0749,
BS1330_II0750
View Structure
9
674086-674249
(+)
FMN
674325-674802 (+)
ribH
6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8)
BRA0695
Single gene
DOOR ID:
1522720
BRA0695
View Structure
10
674086-674249
(+)
FMN
674325-674802 (+)
ribH
6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8)
BS1330_II0688
Single gene
DOOR ID:
3548024
BS1330_II0688
View Structure
11
1682136-1682182
(+)
glutamine
1682345-1683782 (-)
pyk
Pyruvate kinase (0)
BS1330_I1742
Operon
DOOR ID:
1344628
BS1330_I1742,
BS1330_I1743
View Structure
12
1682149-1682195
(+)
glutamine
1682358-1683795 (-)
pyk
BR1748
Operon
DOOR ID:
68358
BR1748,
BR1749
View Structure
13
713319-713403
(-)
glycine
712067-713171 (-)
gcvT
BRA0727
Operon
DOOR ID:
68576
BRA0725,
BRA0726,
BRA0727
View Structure
14
713319-713403
(-)
glycine
712067-713171 (-)
gcvT
Glycine cleavage system aminomethyltransferase T
BS1330_II0720
Operon
DOOR ID:
1344206
BS1330_II0718,
BS1330_II0719,
BS1330_II0720
View Structure
15
318067-318146
(-)
sam-alpha
316779-317976 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
BS1330_I0306
Single gene
DOOR ID:
3548365
BS1330_I0306
View Structure
16
318081-318160
(-)
sam-alpha
316793-317990 (-)
metZ
BR0305
Single gene
DOOR ID:
1521630
BR0305
View Structure
17
1688958-1689128
(+)
TPP
1689169-1690174 (+)
tbpA
Thiamine-binding periplasmic protein
BS1330_I1751
Operon
DOOR ID:
1344631
BS1330_I1751,
BS1330_I1752,
BS1330_I1753
View Structure
18
1688971-1689141
(+)
TPP
1689182-1690187 (+)
tbpA
Thiamine-binding periplasmic protein
BR1757
Operon
DOOR ID:
68361
BR1757,
BR1758,
BR1759
View Structure
19
227930-228036
(-)
TPP
226967-227843 (-)
thiD
Phosphomethylpyrimidine kinase
BS1330_I0218
Operon
DOOR ID:
1344340
BS1330_I0218,
BS1330_I0217,
BS1330_I0216,
BS1330_I0215,
BS1330_I0214,
BS1330_I0213,
BS1330_I0212,
BS1330_I0211
View Structure
20
227946-228052
(-)
TPP
226983-227859 (-)
thiD
BR0218
Operon
DOOR ID:
68068
BR0211,
BR0212,
BR0213,
BR0214,
BR0215,
BR0216,
BR0217,
BR0218
View Structure
Genome:
Brucella suis 1330
(
NC_004310.3
);
Taxonomy:
Alphaproteobacteria
a:21:{i:0;a:19:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";i:18;s:9:"Structure";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017251.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1270665-1270902";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1270425-1270614";i:10;s:1:"-";i:11;s:12:"BS1330_I1306";i:12;s:0:"";i:13;s:12:"BS1330_I1306";i:14;s:6:"Operon";i:15;s:7:"1344547";i:16;s:96:"BS1330_I1300; BS1330_I1301; BS1330_I1302; BS1330_I1303; BS1330_I1304; BS1330_I1305; BS1330_I1306";i:17;s:1:" ";i:18;N;}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004310.3";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1270680-1270917";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1270440-1270629";i:10;s:1:"-";i:11;s:6:"BR1310";i:12;s:0:"";i:13;s:6:"BR1310";i:14;s:6:"Operon";i:15;s:5:"68277";i:16;s:54:"BR1304; BR1305; BR1306; BR1307; BR1308; BR1309; BR1310";i:17;s:1:" ";i:18;N;}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017251.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1309053-1309281";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1307033-1308896";i:10;s:1:"-";i:11;s:12:"BS1330_I1342";i:12;s:47:"Iron compound TonB-dependent receptor; putative";i:13;s:12:"BS1330_I1342";i:14;s:6:"Operon";i:15;s:7:"1344553";i:16;s:54:"BS1330_I1339; BS1330_I1340; BS1330_I1341; BS1330_I1342";i:17;s:1:" ";i:18;N;}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004310.3";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1309068-1309296";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1307048-1308911";i:10;s:1:"-";i:11;s:6:"BR1347";i:12;s:0:"";i:13;s:6:"BR1347";i:14;s:6:"Operon";i:15;s:5:"68283";i:16;s:30:"BR1344; BR1345; BR1346; BR1347";i:17;s:1:" ";i:18;N;}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004311.2";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"297512-297725";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"298076-298298";i:10;s:1:"+";i:11;s:4:"nrdH";i:12;s:0:"";i:13;s:7:"BRA0314";i:14;s:6:"Operon";i:15;s:5:"68499";i:16;s:34:"BRA0314; BRA0315; BRA0316; BRA0317";i:17;s:1:" ";i:18;N;}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017250.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"297512-297725";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"298076-298298";i:10;s:1:"+";i:11;s:4:"nrdH";i:12;s:30:"Glutaredoxin-like protein nrdH";i:13;s:13:"BS1330_II0311";i:14;s:6:"Operon";i:15;s:7:"1344129";i:16;s:58:"BS1330_II0311; BS1330_II0312; BS1330_II0313; BS1330_II0314";i:17;s:36:"cell redox homeostasis [GO:0045454] ";i:18;N;}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_004311.2";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"738425-738657";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"737190-738225";i:10;s:1:"-";i:11;s:7:"BRA0756";i:12;s:0:"";i:13;s:7:"BRA0756";i:14;s:6:"Operon";i:15;s:5:"68581";i:16;s:34:"BRA0754; BRA0755; BRA0756; BRA0757";i:17;s:1:" ";i:18;N;}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017250.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"738425-738657";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"737190-738225";i:10;s:1:"-";i:11;s:13:"BS1330_II0749";i:12;s:72:"Iron compound ABC transporter; periplasmic iron compound-binding protein";i:13;s:13:"BS1330_II0749";i:14;s:6:"Operon";i:15;s:7:"1344211";i:16;s:58:"BS1330_II0747; BS1330_II0748; BS1330_II0749; BS1330_II0750";i:17;s:1:" ";i:18;N;}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_004311.2";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"674086-674249";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"674325-674802";i:10;s:1:"+";i:11;s:4:"ribH";i:12;s:92:"6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8)";i:13;s:7:"BRA0695";i:14;s:11:"Single gene";i:15;s:7:"1522720";i:16;s:7:"BRA0695";i:17;s:45:"riboflavin biosynthetic process [GO:0009231] ";i:18;N;}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017250.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"674086-674249";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"674325-674802";i:10;s:1:"+";i:11;s:4:"ribH";i:12;s:92:"6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8)";i:13;s:13:"BS1330_II0688";i:14;s:11:"Single gene";i:15;s:7:"3548024";i:16;s:13:"BS1330_II0688";i:17;s:45:"riboflavin biosynthetic process [GO:0009231] ";i:18;N;}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017251.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1682136-1682182";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"1682345-1683782";i:10;s:1:"-";i:11;s:3:"pyk";i:12;s:19:"Pyruvate kinase (0)";i:13;s:12:"BS1330_I1742";i:14;s:6:"Operon";i:15;s:7:"1344628";i:16;s:26:"BS1330_I1742; BS1330_I1743";i:17;s:1:" ";i:18;N;}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_004310.3";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1682149-1682195";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"1682358-1683795";i:10;s:1:"-";i:11;s:3:"pyk";i:12;s:0:"";i:13;s:6:"BR1748";i:14;s:6:"Operon";i:15;s:5:"68358";i:16;s:14:"BR1748; BR1749";i:17;s:1:" ";i:18;N;}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_004311.2";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"713319-713403";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"712067-713171";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:7:"BRA0727";i:14;s:6:"Operon";i:15;s:5:"68576";i:16;s:25:"BRA0725; BRA0726; BRA0727";i:17;s:1:" ";i:18;N;}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017250.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"713319-713403";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"712067-713171";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:48:"Glycine cleavage system aminomethyltransferase T";i:13;s:13:"BS1330_II0720";i:14;s:6:"Operon";i:15;s:7:"1344206";i:16;s:43:"BS1330_II0718; BS1330_II0719; BS1330_II0720";i:17;s:39:"glycine catabolic process [GO:0006546] ";i:18;N;}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017251.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"318067-318146";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"316779-317976";i:10;s:1:"-";i:11;s:4:"metZ";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:12:"BS1330_I0306";i:14;s:11:"Single gene";i:15;s:7:"3548365";i:16;s:12:"BS1330_I0306";i:17;s:105:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268] ";i:18;N;}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_004310.3";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"318081-318160";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"316793-317990";i:10;s:1:"-";i:11;s:4:"metZ";i:12;s:0:"";i:13;s:6:"BR0305";i:14;s:11:"Single gene";i:15;s:7:"1521630";i:16;s:6:"BR0305";i:17;s:1:" ";i:18;N;}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_017251.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1688958-1689128";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1689169-1690174";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:12:"BS1330_I1751";i:14;s:6:"Operon";i:15;s:7:"1344631";i:16;s:40:"BS1330_I1751; BS1330_I1752; BS1330_I1753";i:17;s:32:"thiamine transport [GO:0015888] ";i:18;N;}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_004310.3";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1688971-1689141";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1689182-1690187";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:6:"BR1757";i:14;s:6:"Operon";i:15;s:5:"68361";i:16;s:22:"BR1757; BR1758; BR1759";i:17;s:32:"thiamine transport [GO:0015888] ";i:18;N;}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_017251.1";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"227930-228036";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"226967-227843";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:12:"BS1330_I0218";i:14;s:6:"Operon";i:15;s:7:"1344340";i:16;s:110:"BS1330_I0218; BS1330_I0217; BS1330_I0216; BS1330_I0215; BS1330_I0214; BS1330_I0213; BS1330_I0212; BS1330_I0211";i:17;s:43:"thiamine biosynthetic process [GO:0009228] ";i:18;N;}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_004310.3";i:2;s:19:"Brucella suis 1330 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"227946-228052";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"226983-227859";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:0:"";i:13;s:6:"BR0218";i:14;s:6:"Operon";i:15;s:5:"68068";i:16;s:62:"BR0211; BR0212; BR0213; BR0214; BR0215; BR0216; BR0217; BR0218";i:17;s:1:" ";i:18;N;}}