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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
559738-559970
(+)
cobalamin
560169-561204 (+)
BMEII0535
Iron(Iii) dicitrate-binding periplasmic protein
BMEII0535
Operon
DOOR ID:
52547
BMEII0534,
BMEII0535,
BMEII0536,
BMEII0537
View Structure
2
679010-679238
(+)
cobalamin
679457-681257 (+)
BMEI0657
Metal chelate outer membrane receptor
BMEI0657
Operon
DOOR ID:
52158
BMEI0657,
BMEI0658,
BMEI0659,
BMEI0660
View Structure
3
717368-717605
(+)
cobalamin
717667-717844 (+)
BMEI0691
BMEI0691
Single gene
DOOR ID:
1476601
BMEI0691
View Structure
4
972913-973126
(-)
cobalamin
972339-972573 (-)
BMEII0932
Glutaredoxin
BMEII0932
Operon
DOOR ID:
52629
BMEII0929,
BMEII0930,
BMEII0931,
BMEII0932
View Structure
5
623584-623747
(-)
FMN
623030-623507 (-)
ribH
6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8) (Type II lumazine synthase)
BMEII0589
Single gene
DOOR ID:
1477411
BMEII0589
View Structure
6
307058-307104
(-)
glutamine
305457-306894 (+)
BMEI0292
Pyruvate kinase (0)
BMEI0292
Operon
DOOR ID:
52088
BMEI0291,
BMEI0292
View Structure
7
584390-584474
(+)
glycine
584621-585725 (+)
gcvT
Aminomethyltransferase (0)
BMEII0559
Operon
DOOR ID:
52552
BMEII0559,
BMEII0560,
BMEII0561
View Structure
8
1664140-1664219
(+)
sam-alpha
1664300-1665506 (+)
BMEI1617
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
BMEI1617
Single gene
DOOR ID:
1477001
BMEI1617
View Structure
9
1774842-1774948
(+)
TPP
1774995-1775910 (+)
BMEI1732
Phosphomethylpyrimidine kinase / hydroxymethylpyrimidine kinase
BMEI1732
Operon
DOOR ID:
52369
BMEI1732,
BMEI1733,
BMEI1734,
BMEI1735,
BMEI1736,
BMEI1737,
BMEI1738,
BMEI1739
View Structure
10
300112-300282
(-)
TPP
299065-300073 (-)
tbpA
Thiamine-binding periplasmic protein
BMEI0285
Operon
DOOR ID:
52087
BMEI0283,
BMEI0284,
BMEI0285
View Structure
Genome:
Brucella melitensis bv. 1 str. 16M
(
NC_003317.1
);
Taxonomy:
Alphaproteobacteria
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BMEI0658; BMEI0659; BMEI0660";i:17;s:1:" ";i:18;N;}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003317.1";i:2;s:35:"Brucella melitensis bv. 1 str. 16M ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"717368-717605";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"717667-717844";i:10;s:1:"+";i:11;s:8:"BMEI0691";i:12;s:0:"";i:13;s:8:"BMEI0691";i:14;s:11:"Single gene";i:15;s:7:"1476601";i:16;s:8:"BMEI0691";i:17;s:1:" ";i:18;N;}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003318.1";i:2;s:35:"Brucella melitensis bv. 1 str. 16M ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"972913-973126";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"972339-972573";i:10;s:1:"-";i:11;s:9:"BMEII0932";i:12;s:12:"Glutaredoxin";i:13;s:9:"BMEII0932";i:14;s:6:"Operon";i:15;s:5:"52629";i:16;s:42:"BMEII0929; BMEII0930; BMEII0931; BMEII0932";i:17;s:36:"cell redox homeostasis [GO:0045454] ";i:18;N;}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_003318.1";i:2;s:35:"Brucella melitensis bv. 1 str. 16M ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"623584-623747";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"623030-623507";i:10;s:1:"-";i:11;s:4:"ribH";i:12;s:120:"6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8) (Type II lumazine synthase)";i:13;s:9:"BMEII0589";i:14;s:11:"Single gene";i:15;s:7:"1477411";i:16;s:9:"BMEII0589";i:17;s:45:"riboflavin biosynthetic process [GO:0009231] ";i:18;N;}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_003317.1";i:2;s:35:"Brucella melitensis bv. 1 str. 16M ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"307058-307104";i:6;s:1:"-";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:13:"305457-306894";i:10;s:1:"+";i:11;s:8:"BMEI0292";i:12;s:19:"Pyruvate kinase (0)";i:13;s:8:"BMEI0292";i:14;s:6:"Operon";i:15;s:5:"52088";i:16;s:18:"BMEI0291; BMEI0292";i:17;s:1:" ";i:18;N;}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_003318.1";i:2;s:35:"Brucella melitensis bv. 1 str. 16M ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"584390-584474";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"584621-585725";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:26:"Aminomethyltransferase (0)";i:13;s:9:"BMEII0559";i:14;s:6:"Operon";i:15;s:5:"52552";i:16;s:31:"BMEII0559; BMEII0560; BMEII0561";i:17;s:39:"glycine catabolic process [GO:0006546] ";i:18;N;}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_003317.1";i:2;s:35:"Brucella melitensis bv. 1 str. 16M ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1664140-1664219";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1664300-1665506";i:10;s:1:"+";i:11;s:8:"BMEI1617";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:8:"BMEI1617";i:14;s:11:"Single gene";i:15;s:7:"1477001";i:16;s:8:"BMEI1617";i:17;s:105:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268] ";i:18;N;}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_003317.1";i:2;s:35:"Brucella melitensis bv. 1 str. 16M ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1774842-1774948";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1774995-1775910";i:10;s:1:"+";i:11;s:8:"BMEI1732";i:12;s:64:"Phosphomethylpyrimidine kinase / hydroxymethylpyrimidine kinase ";i:13;s:8:"BMEI1732";i:14;s:6:"Operon";i:15;s:5:"52369";i:16;s:78:"BMEI1732; BMEI1733; BMEI1734; BMEI1735; BMEI1736; BMEI1737; BMEI1738; BMEI1739";i:17;s:43:"thiamine biosynthetic process [GO:0009228] ";i:18;N;}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_003317.1";i:2;s:35:"Brucella melitensis bv. 1 str. 16M ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"300112-300282";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"299065-300073";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:8:"BMEI0285";i:14;s:6:"Operon";i:15;s:5:"52087";i:16;s:28:"BMEI0283; BMEI0284; BMEI0285";i:17;s:32:"thiamine transport [GO:0015888] ";i:18;N;}}
