About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1291268-1291505
(-)
cobalamin
1291028-1291217 (-)
cbtB
BM28_A1323
Operon
DOOR ID:
1343661
BM28_A1317,
BM28_A1318,
BM28_A1319,
BM28_A1320,
BM28_A1321,
BM28_A1322,
BM28_A1323
View Structure
2
1329656-1329884
(-)
cobalamin
1326783-1327623 (-)
BM28_A1360
BM28_A1360
Operon
DOOR ID:
1343669
BM28_A1358,
BM28_A1359,
BM28_A1360,
BM28_A1361
View Structure
3
297057-297270
(+)
cobalamin
297621-297843 (+)
BM28_B0307
BM28_B0307
Operon
DOOR ID:
1015466
BM28_B0307,
BM28_B0308,
BM28_B0309,
BM28_B0310
View Structure
4
717603-717835
(-)
cobalamin
717359-717590 (-)
BM28_B0721
BM28_B0721
Operon
DOOR ID:
1015559
BM28_B0718,
BM28_B0719,
BM28_B0720,
BM28_B0721
View Structure
5
653267-653430
(+)
FMN
653506-653983 (+)
BM28_B0659
BM28_B0659
Single gene
DOOR ID:
3541698
BM28_B0659
View Structure
6
1701379-1701425
(+)
glutamine
1701588-1703025 (-)
BM28_A1748
BM28_A1748
Operon
DOOR ID:
1343746
BM28_A1748,
BM28_A1749
View Structure
7
692505-692589
(-)
glycine
691253-692357 (-)
gcvT
BM28_B0695
Operon
DOOR ID:
1015553
BM28_B0693,
BM28_B0694,
BM28_B0695
View Structure
8
339021-339100
(-)
sam-alpha
337733-338930 (-)
BM28_A0336
BM28_A0336
Single gene
DOOR ID:
3540593
BM28_A0336
View Structure
9
1708201-1708371
(+)
TPP
1708412-1709417 (+)
tbpA
BM28_A1756
Operon
DOOR ID:
1343748
BM28_A1756,
BM28_A1757,
BM28_A1758
View Structure
10
228051-228157
(-)
TPP
227088-227964 (-)
thiD
BM28_A0228
Operon
DOOR ID:
1343444
BM28_A0220,
BM28_A0221,
BM28_A0222,
BM28_A0223,
BM28_A0224,
BM28_A0225,
BM28_A0226,
BM28_A0227,
BM28_A0228
View Structure
Genome:
Brucella melitensis M28
(
NC_017244.1
);
Taxonomy:
Alphaproteobacteria
a:11:{i:0;a:19:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";i:18;s:9:"Structure";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017244.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1291268-1291505";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1291028-1291217";i:10;s:1:"-";i:11;s:4:"cbtB";i:12;s:0:"";i:13;s:10:"BM28_A1323";i:14;s:6:"Operon";i:15;s:7:"1343661";i:16;s:82:"BM28_A1317; BM28_A1318; BM28_A1319; BM28_A1320; BM28_A1321; BM28_A1322; BM28_A1323";i:17;s:1:" ";i:18;N;}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017244.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1329656-1329884";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1326783-1327623";i:10;s:1:"-";i:11;s:10:"BM28_A1360";i:12;s:0:"";i:13;s:10:"BM28_A1360";i:14;s:6:"Operon";i:15;s:7:"1343669";i:16;s:46:"BM28_A1358; BM28_A1359; BM28_A1360; BM28_A1361";i:17;s:1:" ";i:18;N;}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017245.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"297057-297270";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"297621-297843";i:10;s:1:"+";i:11;s:10:"BM28_B0307";i:12;s:0:"";i:13;s:10:"BM28_B0307";i:14;s:6:"Operon";i:15;s:7:"1015466";i:16;s:46:"BM28_B0307; BM28_B0308; BM28_B0309; BM28_B0310";i:17;s:1:" ";i:18;N;}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017245.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"717603-717835";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"717359-717590";i:10;s:1:"-";i:11;s:10:"BM28_B0721";i:12;s:0:"";i:13;s:10:"BM28_B0721";i:14;s:6:"Operon";i:15;s:7:"1015559";i:16;s:46:"BM28_B0718; BM28_B0719; BM28_B0720; BM28_B0721";i:17;s:1:" ";i:18;N;}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017245.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"653267-653430";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"653506-653983";i:10;s:1:"+";i:11;s:10:"BM28_B0659";i:12;s:0:"";i:13;s:10:"BM28_B0659";i:14;s:11:"Single gene";i:15;s:7:"3541698";i:16;s:10:"BM28_B0659";i:17;s:1:" ";i:18;N;}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017244.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1701379-1701425";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"1701588-1703025";i:10;s:1:"-";i:11;s:10:"BM28_A1748";i:12;s:0:"";i:13;s:10:"BM28_A1748";i:14;s:6:"Operon";i:15;s:7:"1343746";i:16;s:22:"BM28_A1748; BM28_A1749";i:17;s:1:" ";i:18;N;}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017245.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"692505-692589";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"691253-692357";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:10:"BM28_B0695";i:14;s:6:"Operon";i:15;s:7:"1015553";i:16;s:34:"BM28_B0693; BM28_B0694; BM28_B0695";i:17;s:1:" ";i:18;N;}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017244.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"339021-339100";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"337733-338930";i:10;s:1:"-";i:11;s:10:"BM28_A0336";i:12;s:0:"";i:13;s:10:"BM28_A0336";i:14;s:11:"Single gene";i:15;s:7:"3540593";i:16;s:10:"BM28_A0336";i:17;s:1:" ";i:18;N;}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017244.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1708201-1708371";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1708412-1709417";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:10:"BM28_A1756";i:14;s:6:"Operon";i:15;s:7:"1343748";i:16;s:34:"BM28_A1756; BM28_A1757; BM28_A1758";i:17;s:1:" ";i:18;N;}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017244.1";i:2;s:24:"Brucella melitensis M28 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"228051-228157";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"227088-227964";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:0:"";i:13;s:10:"BM28_A0228";i:14;s:6:"Operon";i:15;s:7:"1343444";i:16;s:106:"BM28_A0220; BM28_A0221; BM28_A0222; BM28_A0223; BM28_A0224; BM28_A0225; BM28_A0226; BM28_A0227; BM28_A0228";i:17;s:1:" ";i:18;N;}}