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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1288647-1288884
(-)
cobalamin
1288407-1288596 (-)
BruAb1_1311
BruAb1_1311
Single gene
DOOR ID:
1661587
BruAb1_1311
View Structure
2
1327034-1327262
(-)
cobalamin
1325014-1326877 (-)
BruAb1_1345
Hypothetical iron compound TonB-dependent receptor
BruAb1_1345
Operon
DOOR ID:
127021
BruAb1_1342,
BruAb1_1343,
BruAb1_1344,
BruAb1_1345
View Structure
3
478516-478748
(+)
cobalamin
478947-479982 (+)
BruAb2_0476
Iron compound ABC transporter; periplasmic iron compound-binding protein
BruAb2_0476
Operon
DOOR ID:
127266
BruAb2_0475,
BruAb2_0476,
BruAb2_0477,
BruAb2_0478
View Structure
4
873919-874132
(-)
cobalamin
873345-873567 (-)
nrdH
NrdH; glutaredoxin-like protein NrdH
BruAb2_0867
Operon
DOOR ID:
127334
BruAb2_0864,
BruAb2_0865,
BruAb2_0866,
BruAb2_0867
View Structure
5
542928-543091
(-)
FMN
542374-542851 (-)
ribH
6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8) (BLS) (Type II lumazine synthase)
BruAb2_0535
Single gene
DOOR ID:
1662206
BruAb2_0535
View Structure
6
1699070-1699116
(+)
glutamine
1699279-1700716 (-)
pyk
Pyruvate kinase (0)
BruAb1_1733
Operon
DOOR ID:
127096
BruAb1_1733,
BruAb1_1734
View Structure
7
503740-503824
(+)
glycine
503971-505075 (+)
gcvT
GcvT; glycine cleavage system T protein
BruAb2_0504
Operon
DOOR ID:
127271
BruAb2_0504,
BruAb2_0505,
BruAb2_0506
View Structure
8
339974-340053
(-)
sam-alpha
338686-339883 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
BruAb1_0331
Single gene
DOOR ID:
1661174
BruAb1_0331
View Structure
9
1705893-1706063
(+)
TPP
1706104-1707109 (+)
tbpA
Thiamine-binding periplasmic protein
BruAb1_1742
Operon
DOOR ID:
127099
BruAb1_1742,
BruAb1_1743,
BruAb1_1744
View Structure
10
229503-229609
(-)
TPP
228540-229416 (-)
thiD
ThiD; phosphomethylpyrimidine kinase
BruAb1_0213
Operon
DOOR ID:
126818
BruAb1_0206,
BruAb1_0207,
BruAb1_0208,
BruAb1_0209,
BruAb1_0210,
BruAb1_0211,
BruAb1_0212,
BruAb1_0213
View Structure
Genome:
Brucella abortus bv. 1 str. 9-941
(
NC_006932.1
);
Taxonomy:
Alphaproteobacteria
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BruAb1_1343; BruAb1_1344; BruAb1_1345";i:17;s:1:" ";i:18;N;}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006933.1";i:2;s:34:"Brucella abortus bv. 1 str. 9-941 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"478516-478748";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"478947-479982";i:10;s:1:"+";i:11;s:11:"BruAb2_0476";i:12;s:72:"Iron compound ABC transporter; periplasmic iron compound-binding protein";i:13;s:11:"BruAb2_0476";i:14;s:6:"Operon";i:15;s:6:"127266";i:16;s:50:"BruAb2_0475; BruAb2_0476; BruAb2_0477; BruAb2_0478";i:17;s:1:" ";i:18;N;}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006933.1";i:2;s:34:"Brucella abortus bv. 1 str. 9-941 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"873919-874132";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"873345-873567";i:10;s:1:"-";i:11;s:4:"nrdH";i:12;s:36:"NrdH; glutaredoxin-like protein NrdH";i:13;s:11:"BruAb2_0867";i:14;s:6:"Operon";i:15;s:6:"127334";i:16;s:50:"BruAb2_0864; BruAb2_0865; BruAb2_0866; BruAb2_0867";i:17;s:36:"cell redox homeostasis [GO:0045454] ";i:18;N;}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006933.1";i:2;s:34:"Brucella abortus bv. 1 str. 9-941 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"542928-543091";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"542374-542851";i:10;s:1:"-";i:11;s:4:"ribH";i:12;s:126:"6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8) (BLS) (Type II lumazine synthase)";i:13;s:11:"BruAb2_0535";i:14;s:11:"Single gene";i:15;s:7:"1662206";i:16;s:11:"BruAb2_0535";i:17;s:45:"riboflavin biosynthetic process [GO:0009231] ";i:18;N;}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006932.1";i:2;s:34:"Brucella abortus bv. 1 str. 9-941 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1699070-1699116";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"1699279-1700716";i:10;s:1:"-";i:11;s:3:"pyk";i:12;s:19:"Pyruvate kinase (0)";i:13;s:11:"BruAb1_1733";i:14;s:6:"Operon";i:15;s:6:"127096";i:16;s:24:"BruAb1_1733; BruAb1_1734";i:17;s:1:" ";i:18;N;}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006933.1";i:2;s:34:"Brucella abortus bv. 1 str. 9-941 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"503740-503824";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"503971-505075";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:39:"GcvT; glycine cleavage system T protein";i:13;s:11:"BruAb2_0504";i:14;s:6:"Operon";i:15;s:6:"127271";i:16;s:37:"BruAb2_0504; BruAb2_0505; BruAb2_0506";i:17;s:39:"glycine catabolic process [GO:0006546] ";i:18;N;}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006932.1";i:2;s:34:"Brucella abortus bv. 1 str. 9-941 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"339974-340053";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"338686-339883";i:10;s:1:"-";i:11;s:4:"metZ";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:11:"BruAb1_0331";i:14;s:11:"Single gene";i:15;s:7:"1661174";i:16;s:11:"BruAb1_0331";i:17;s:105:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268] ";i:18;N;}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_006932.1";i:2;s:34:"Brucella abortus bv. 1 str. 9-941 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1705893-1706063";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1706104-1707109";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:11:"BruAb1_1742";i:14;s:6:"Operon";i:15;s:6:"127099";i:16;s:37:"BruAb1_1742; BruAb1_1743; BruAb1_1744";i:17;s:32:"thiamine transport [GO:0015888] ";i:18;N;}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_006932.1";i:2;s:34:"Brucella abortus bv. 1 str. 9-941 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"229503-229609";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"228540-229416";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:36:"ThiD; phosphomethylpyrimidine kinase";i:13;s:11:"BruAb1_0213";i:14;s:6:"Operon";i:15;s:6:"126818";i:16;s:102:"BruAb1_0206; BruAb1_0207; BruAb1_0208; BruAb1_0209; BruAb1_0210; BruAb1_0211; BruAb1_0212; BruAb1_0213";i:17;s:43:"thiamine biosynthetic process [GO:0009228] ";i:18;N;}}