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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1286976-1287213
(-)
cobalamin
1286736-1286925 (-)
BAbS19_I12430
BAbS19_I12430
Single gene
DOOR ID:
2330645
BAbS19_I12430
View Structure
2
1325364-1325592
(-)
cobalamin
1323344-1325207 (-)
BAbS19_I12770
TonB-dependent receptor protein
BAbS19_I12770
Operon
DOOR ID:
442342
BAbS19_I12740,
BAbS19_I12750,
BAbS19_I12760,
BAbS19_I12770
View Structure
3
477721-477953
(+)
cobalamin
478152-479187 (+)
BAbS19_II04560
Periplasmic binding protein
BAbS19_II04560
Operon
DOOR ID:
441767
BAbS19_II04560,
BAbS19_II04570,
BAbS19_II04580
View Structure
4
873156-873369
(-)
cobalamin
872582-872804 (-)
BAbS19_II08200
Glutaredoxin
BAbS19_II08200
Operon
DOOR ID:
441833
BAbS19_II08170,
BAbS19_II08180,
BAbS19_II08190,
BAbS19_II08200
View Structure
5
542132-542295
(-)
FMN
541578-542055 (-)
BAbS19_II05140
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
BAbS19_II05140
Single gene
DOOR ID:
2329526
BAbS19_II05140
View Structure
6
1697392-1697438
(+)
glutamine
1697601-1699038 (-)
BAbS19_I16460
Pyruvate kinase (0)
BAbS19_I16460
Operon
DOOR ID:
442406
BAbS19_I16460,
BAbS19_I16470
View Structure
7
502944-503028
(+)
glycine
503175-504279 (+)
gcvT
Glycine cleavage T protein (Aminomethyl transferase)
BAbS19_II04830
Operon
DOOR ID:
441772
BAbS19_II04830,
BAbS19_II04840,
BAbS19_II04850
View Structure
8
338359-338438
(-)
sam-alpha
337071-338268 (-)
BAbS19_I03050
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
BAbS19_I03050
Single gene
DOOR ID:
2330208
BAbS19_I03050
View Structure
9
1704214-1704384
(+)
TPP
1704425-1705430 (+)
tbpA
ThiB; thiamine-binding periplasmic binding protein
BAbS19_I16530
Operon
DOOR ID:
442407
BAbS19_I16530,
BAbS19_I16540,
BAbS19_I16550
View Structure
10
227888-227994
(-)
TPP
226925-227801 (-)
BAbS19_I02060
Phosphomethylpyrimidine kinase
BAbS19_I02060
Operon
DOOR ID:
442154
BAbS19_I01990,
BAbS19_I02000,
BAbS19_I02010,
BAbS19_I02020,
BAbS19_I02030,
BAbS19_I02040,
BAbS19_I02050,
BAbS19_I02060
View Structure
Genome:
Brucella abortus S19
(
NC_010742.1
);
Taxonomy:
Alphaproteobacteria
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homocysteine biosynthetic process [GO:0071268] ";i:18;N;}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010742.1";i:2;s:21:"Brucella abortus S19 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1704214-1704384";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1704425-1705430";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:50:"ThiB; thiamine-binding periplasmic binding protein";i:13;s:13:"BAbS19_I16530";i:14;s:6:"Operon";i:15;s:6:"442407";i:16;s:43:"BAbS19_I16530; BAbS19_I16540; BAbS19_I16550";i:17;s:32:"thiamine transport [GO:0015888] ";i:18;N;}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010742.1";i:2;s:21:"Brucella abortus S19 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"227888-227994";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"226925-227801";i:10;s:1:"-";i:11;s:13:"BAbS19_I02060";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:13:"BAbS19_I02060";i:14;s:6:"Operon";i:15;s:6:"442154";i:16;s:118:"BAbS19_I01990; BAbS19_I02000; BAbS19_I02010; BAbS19_I02020; BAbS19_I02030; BAbS19_I02040; BAbS19_I02050; BAbS19_I02060";i:17;s:43:"thiamine biosynthetic process [GO:0009228] ";i:18;N;}}
