Genome: Bacillus cereus B4264 (NC_011725.1); Taxonomy: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 1063140-1063232 (+)c-di-GMP-I1063291-1070110 (+)BCB4264_A1095

Collagen adhesion protein		BCB4264_A1095single gene

DOOR ID: 2429191		BCB4264_A1095 View Structure
2 426372-426456 (+)c-di-GMP-I426590-428333 (+)BCB4264_A0442

Methyl-accepting chemotaxis protein		BCB4264_A0442single gene

DOOR ID: 2429788		BCB4264_A0442 View Structure
3 4732913-4733001 (-)c-di-GMP-I4730174-4732805 (-)BCB4264_A4892

Uncharacterized protein		BCB4264_A4892operon

DOOR ID: 492063		BCB4264_A4890,
BCB4264_A4891,
BCB4264_A4892		 View Structure
4 4733074-4733162 (-)c-di-GMP-I4730174-4732805 (-)BCB4264_A4892

Uncharacterized protein		BCB4264_A4892operon

DOOR ID: 492063		BCB4264_A4890,
BCB4264_A4891,
BCB4264_A4892		 View Structure
5 4019229-4019417 (+)cobalamin4019544-4021833 (+)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BCB4264_A4108Single gene

DOOR ID: 2428084		BCB4264_A4108 View Structure
6 5025071-5025130 (+)fluoride5025154-5025589 (+)BCB4264_A5220

Putative fluoride ion transporter CrcB		BCB4264_A5220Operon

DOOR ID: 492129		BCB4264_A5220,
BCB4264_A5221		 View Structure
7 1471449-1471588 (+)FMN1471750-1472329 (+)BCB4264_A1537

Riboflavin transporter		BCB4264_A1537Single gene

DOOR ID: 2430100		BCB4264_A1537 View Structure
8 4115045-4115188 (+)FMN4115493-4116606 (+)ribD2

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		BCB4264_A4220Operon

DOOR ID: 491923		BCB4264_A4220,
BCB4264_A4221,
BCB4264_A4222,
BCB4264_A4223		 View Structure
9 163301-163456 (+)glmS163647-165450 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BCB4264_A0191Single gene

DOOR ID: 2430031		BCB4264_A0191 View Structure
10 2251763-2251883 (-)glycine2250288-2251656 (-)BCB4264_A2346

Sodium/alanine symporter family protein		BCB4264_A2346Single gene

DOOR ID: 2430431		BCB4264_A2346 View Structure
11 1412035-1412216 (+)lysine1412396-1413713 (+)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		BCB4264_A1473Single gene

DOOR ID: 2429137		BCB4264_A1473 View Structure
12 1728157-1728343 (-)lysine1726724-1727954 (-)dapG1

Aspartokinase 		BCB4264_A1821Single gene

DOOR ID: 2428772		BCB4264_A1821 View Structure
13 2943809-2944001 (+)lysine2944113-2945580 (+)lysP

Lysine-specific permease		BCB4264_A3071Single gene

DOOR ID: 2428219		BCB4264_A3071 View Structure
14 866445-866626 (-)lysine864871-866296 (-)BCB4264_A0901

Amino acid permease family protein		BCB4264_A0901Operon

DOOR ID: 491372		BCB4264_A0900,
BCB4264_A0901		 View Structure
15 1350668-1350711 (+)PreQ11350804-1351467 (+)BCB4264_A1394

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BCB4264_A1394Operon

DOOR ID: 491458		BCB4264_A1394,
BCB4264_A1395,
BCB4264_A1396,
BCB4264_A1397		 View Structure
16 1589937-1589981 (+)PreQ11589987-1590473 (+)BCB4264_A1662

BCB4264_A1662Single gene

DOOR ID: 2430660		BCB4264_A1662 View Structure
17 1545324-1545425 (+)purine1545532-1546126 (+)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BCB4264_A1626Operon

DOOR ID: 491497		BCB4264_A1625,
BCB4264_A1626,
BCB4264_A1627		 View Structure
18 259191-259292 (+)purine259456-260995 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		BCB4264_A0300Single gene

DOOR ID: 2428257		BCB4264_A0300 View Structure
19 261148-261249 (+)purine261379-262705 (+)BCB4264_A0302

Xanthine/uracil permease family protein		BCB4264_A0302Single gene

DOOR ID: 2429139		BCB4264_A0302 View Structure
20 308771-308872 (+)purine308982-309468 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		BCB4264_A0334Operon

DOOR ID: 491281		BCB4264_A0334,
BCB4264_A0335,
BCB4264_A0336,
BCB4264_A0337,
BCB4264_A0338,
BCB4264_A0339,
BCB4264_A0340,
BCB4264_A0341,
BCB4264_A0342,
BCB4264_A0343,
BCB4264_A0344		 View Structure
21 356066-356167 (-)purine354666-355863 (-)BCB4264_A0379

Nucleoside transporter; NupC family		BCB4264_A0379Single gene

DOOR ID: 2429310		BCB4264_A0379 View Structure
22 3810035-3810136 (-)purine3809076-3809763 (-)BCB4264_A3891

Transcriptional regulator; GntR family		BCB4264_A3891Single gene

DOOR ID: 2428359		BCB4264_A3891 View Structure
23 1413829-1413937 (+)SAM1414010-1414154 (+)BCB4264_A1475

BCB4264_A1475Single gene

DOOR ID: 2429578		BCB4264_A1475 View Structure
24 1426592-1426697 (+)SAM1426791-1428108 (+)BCB4264_A1490

Na+/H+ antiporter family protein		BCB4264_A1490Single gene

DOOR ID: 2430269		BCB4264_A1490 View Structure
25 174308-174422 (-)SAM173408-174221 (-)BCB4264_A0199

Lipoprotein		BCB4264_A0199Operon

DOOR ID: 491262		BCB4264_A0197,
BCB4264_A0198,
BCB4264_A0199		 View Structure
26 182705-182810 (+)SAM182945-183863 (+)BCB4264_A0210

Oligopeptide ABC transporter; permease protein		BCB4264_A0210Operon

DOOR ID: 491264		BCB4264_A0210,
BCB4264_A0211,
BCB4264_A0212,
BCB4264_A0213,
BCB4264_A0214		 View Structure
27 194160-194264 (-)SAM192386-194027 (-)BCB4264_A0220

Putative oligopeptide ABC transporter; oligopeptide-binding protein		BCB4264_A0220Single gene

DOOR ID: 2428096		BCB4264_A0220 View Structure
28 2574901-2575016 (+)SAM2575156-2575705 (+)BCB4264_A2665

BCB4264_A2665Operon

DOOR ID: 491662		BCB4264_A2665,
BCB4264_A2666,
BCB4264_A2667		 View Structure
29 3080485-3080586 (-)SAM3079190-3080396 (-)BCB4264_A3197

Peptidase M20 domain-containing protein 2		BCB4264_A3197Single gene

DOOR ID: 2428118		BCB4264_A3197 View Structure
30 3193683-3193781 (-)SAM3193324-3193582 (-)BCB4264_A3312

BCB4264_A3312Single gene

DOOR ID: 2430666		BCB4264_A3312 View Structure
31 333898-334004 (+)SAM334127-335147 (+)BCB4264_A0358

Methionine import ATP-binding protein MetN 		BCB4264_A0358Operon

DOOR ID: 491284		BCB4264_A0358,
BCB4264_A0359,
BCB4264_A0360		 View Structure
32 384959-385071 (-)SAM384240-384873 (-)BCB4264_A0408

Putative cyclase		BCB4264_A0408Single gene

DOOR ID: 2428784		BCB4264_A0408 View Structure
33 4050029-4050170 (-)SAM4048756-4049938 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BCB4264_A4140Operon

DOOR ID: 491912		BCB4264_A4139,
BCB4264_A4140		 View Structure
34 4052363-4052468 (+)SAM4052532-4053777 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		BCB4264_A4145Operon

DOOR ID: 491913		BCB4264_A4145,
BCB4264_A4146,
BCB4264_A4147,
BCB4264_A4148		 View Structure
35 4241521-4241630 (-)SAM4239617-4241450 (-)BCB4264_A4367

Homocysteine S-methyltransferase domain protein/methylenetetrahydrofolate reductase family protein		BCB4264_A4367Operon

DOOR ID: 491949		BCB4264_A4365,
BCB4264_A4366,
BCB4264_A4367		 View Structure
36 4241834-4241944 (+)SAM4242038-4243151 (+)metI

Cystathionine gamma-synthase/O-acetylhomoserine thiolyase		BCB4264_A4370Operon

DOOR ID: 491950		BCB4264_A4370,
BCB4264_A4371		 View Structure
37 4719974-4720095 (-)SAM4718604-4719804 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BCB4264_A4877Single gene

DOOR ID: 2428445		BCB4264_A4877 View Structure
38 4938690-4938797 (-)SAM4937486-4938680 (-)BCB4264_A5129

Methionine import ATP-binding protein MetN 		BCB4264_A5129Operon

DOOR ID: 492111		BCB4264_A5126,
BCB4264_A5127,
BCB4264_A5128,
BCB4264_A5129		 View Structure
39 5328430-5328533 (-)SAM5327038-5328337 (-)BCB4264_A5529

O-acetylhomoserine/O-acetylserine sulfhydrylase		BCB4264_A5529Operon

DOOR ID: 492185		BCB4264_A5528,
BCB4264_A5529		 View Structure
40 2506131-2506236 (+)TPP2506363-2507053 (+)tenA

Aminopyrimidine aminohydrolase 		BCB4264_A2584Single gene

DOOR ID: 2428117		BCB4264_A2584 View Structure
41 422991-423103 (+)TPP423175-423985 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		BCB4264_A0439Operon

DOOR ID: 491296		BCB4264_A0439,
BCB4264_A0440		 View Structure
42 432101-432202 (+)TPP432303-432624 (+)BCB4264_A0445

BCB4264_A0445Operon

DOOR ID: 491297		BCB4264_A0445,
BCB4264_A0446,
BCB4264_A0447,
BCB4264_A0448		 View Structure
43 4763714-4763815 (+)TPP4763901-4764573 (+)BCB4264_A4935

Probable proton-coupled thiamine transporter YuaJ		BCB4264_A4935Single gene

DOOR ID: 2429542		BCB4264_A4935 View Structure
44 5146468-5146583 (-)TPP5144594-5146355 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BCB4264_A5347Single gene

DOOR ID: 2428669		BCB4264_A5347 View Structure
45 761143-761254 (+)TPP761503-762199 (+)BCB4264_A0782

Aminopyrimidine aminohydrolase 		BCB4264_A0782Operon

DOOR ID: 491347		BCB4264_A0782,
BCB4264_A0783,
BCB4264_A0784,
BCB4264_A0785,
BCB4264_A0786,
BCB4264_A0787,
BCB4264_A0788,
BCB4264_A0789,
BCB4264_A0790,
BCB4264_A0791		 View Structure
46 761315-761418 (+)TPP761503-762199 (+)BCB4264_A0782

Aminopyrimidine aminohydrolase 		BCB4264_A0782Operon

DOOR ID: 491347		BCB4264_A0782,
BCB4264_A0783,
BCB4264_A0784,
BCB4264_A0785,
BCB4264_A0786,
BCB4264_A0787,
BCB4264_A0788,
BCB4264_A0789,
BCB4264_A0790,
BCB4264_A0791		 View Structure
47 1785224-1785370 (+)ydaO-yuaA1785514-1787341 (+)BCB4264_A1880

Putative membrane protein		BCB4264_A1880Single gene

DOOR ID: 2429027		BCB4264_A1880 View Structure
48 3235189-3235331 (+)ydaO-yuaA3235427-3235571 (+)BCB4264_A3359

BCB4264_A3359Single gene

DOOR ID: 2429626		BCB4264_A3359 View Structure
49 769318-769465 (+)ydaO-yuaA769558-769945 (+)BCB4264_A0793

BCB4264_A0793Operon

DOOR ID: 491348		BCB4264_A0793,
BCB4264_A0794,
BCB4264_A0795		 View Structure
50 770453-770598 (+)ydaO-yuaA770899-772567 (+)kdpA

Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)		BCB4264_A0797Operon

DOOR ID: 491349		BCB4264_A0797,
BCB4264_A0798,
BCB4264_A0799,
BCB4264_A0800		 View Structure
51 1557962-1558125 (+)ykoK1558462-1559188 (+)BCB4264_A1642

Putative cation transporter		BCB4264_A1642Single gene

DOOR ID: 2429428		BCB4264_A1642 View Structure
52 2411569-2411745 (-)ykoK2410260-2411382 (-)BCB4264_A2493

Stage V sporulation protein E		BCB4264_A2493Single gene

DOOR ID: 2428426		BCB4264_A2493 View Structure
53 2412253-2412418 (+)ykoK2412699-2414028 (+)mgtE

Magnesium transporter MgtE		BCB4264_A2496Single gene

DOOR ID: 2429140		BCB4264_A2496 View Structure
54 4145752-4145919 (+)ykoK4146250-4148956 (+)mgtA

Magnesium-importing ATPase 		BCB4264_A4254Operon

DOOR ID: 491928		BCB4264_A4254,
BCB4264_A4255		 View Structure
55 1320554-1320728 (-)yybP-ykoY1319676-1320471 (-)BCB4264_A1360

Membrane protein; TerC family		BCB4264_A1360Single gene

DOOR ID: 2428411		BCB4264_A1360 View Structure