About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
124967-125078
(-)
TPP
122663-124574 (-)
AMBLS11_00495
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
AMBLS11_00495
Operon
DOOR ID:
1163364
AMBLS11_00470
(thiH)
,
AMBLS11_00475
(thiG)
,
AMBLS11_00480,
AMBLS11_00485,
AMBLS11_00490,
AMBLS11_00495
View Structure
2
708994-709260
(-)
cobalamin
706980-708933 (-)
AMBLS11_03035
TonB-dependent receptor
AMBLS11_03035
Single gene
DOOR ID:
3939175
AMBLS11_03035
View Structure
3
1252664-1252767
(+)
TPP
1252822-1254913 (+)
AMBLS11_05360
TonB-dependent receptor
AMBLS11_05360
Operon
DOOR ID:
1163558
AMBLS11_05360,
AMBLS11_05365,
AMBLS11_05370,
AMBLS11_05375
View Structure
4
3556349-3556475
(-)
yybP-ykoY
3555737-3556295 (-)
AMBLS11_15160
Putative manganese efflux pump MntP
AMBLS11_15160
Operon
DOOR ID:
1164000
AMBLS11_15155,
AMBLS11_15160
View Structure
Genome:
Alteromonas macleodii str. 'Black Sea 11'
(
NC_018692.1
);
Phylum:
Gammaproteobacteria
a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018692.1";i:2;s:42:"Alteromonas macleodii str. 'Black Sea 11' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"124967-125078";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"122663-124574";i:10;s:1:"-";i:11;s:13:"AMBLS11_00495";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:13:"AMBLS11_00495";i:14;s:6:"Operon";i:15;s:7:"1163364";i:16;s:95:"AMBLS11_00470(thiH);AMBLS11_00475(thiG);AMBLS11_00480;AMBLS11_00485;AMBLS11_00490;AMBLS11_00495";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018692.1";i:2;s:42:"Alteromonas macleodii str. 'Black Sea 11' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"708994-709260";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"706980-708933";i:10;s:1:"-";i:11;s:13:"AMBLS11_03035";i:12;s:23:"TonB-dependent receptor";i:13;s:13:"AMBLS11_03035";i:14;s:11:"Single gene";i:15;s:7:"3939175";i:16;s:13:"AMBLS11_03035";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018692.1";i:2;s:42:"Alteromonas macleodii str. 'Black Sea 11' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1252664-1252767";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1252822-1254913";i:10;s:1:"+";i:11;s:13:"AMBLS11_05360";i:12;s:23:"TonB-dependent receptor";i:13;s:13:"AMBLS11_05360";i:14;s:6:"Operon";i:15;s:7:"1163558";i:16;s:55:"AMBLS11_05360;AMBLS11_05365;AMBLS11_05370;AMBLS11_05375";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018692.1";i:2;s:42:"Alteromonas macleodii str. 'Black Sea 11' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3556349-3556475";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3555737-3556295";i:10;s:1:"-";i:11;s:13:"AMBLS11_15160";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:13:"AMBLS11_15160";i:14;s:6:"Operon";i:15;s:7:"1164000";i:16;s:27:"AMBLS11_15155;AMBLS11_15160";i:17;s:0:"";i:18;s:15:"View Structure ";}}
