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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
203356-203448
(+)
TPP
203547-204507 (+)
ASU2_00995
Thiamine-binding periplasmic protein
ASU2_00995
Single gene
DOOR ID:
3936694
ASU2_00995
View Structure
2
748247-748429
(-)
lysine
746793-748146 (-)
ASU2_03530
Aspartokinase
ASU2_03530
Single gene
DOOR ID:
3936872
ASU2_03530
View Structure
3
766235-766429
(-)
MOCO
764506-764983 (-)
ASU2_03605
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
ASU2_03605
Operon
DOOR ID:
1162777
ASU2_03585,
ASU2_03590,
ASU2_03595,
ASU2_03600,
ASU2_03605
View Structure
4
767746-767916
(+)
MOCO
767934-770409 (+)
ASU2_03620
Trimethylamine-N-oxide reductase
ASU2_03620
Single gene
DOOR ID:
3936881
ASU2_03620
View Structure
5
959912-960004
(-)
TPP
958893-959694 (-)
ASU2_04400
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ASU2_04400
Operon
DOOR ID:
1162808
ASU2_04390
(thiE)
,
ASU2_04395,
ASU2_04400
View Structure
6
1040562-1040734
(-)
lysine
1038921-1040430 (-)
ASU2_04720
Putative integral membrane protein
ASU2_04720
Single gene
DOOR ID:
3936959
ASU2_04720
View Structure
7
1126655-1126780
(-)
FMN
1125435-1126521 (-)
ASU2_05085
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
ASU2_05085
Operon
DOOR ID:
1162840
ASU2_05070
(ribH)
,
ASU2_05075,
ASU2_05080,
ASU2_05085
View Structure
8
1283987-1284048
(+)
PreQ1
1284051-1284720 (+)
ASU2_05805
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
ASU2_05805
Operon
DOOR ID:
1162875
ASU2_05800,
ASU2_05805,
ASU2_05810,
ASU2_05815
View Structure
9
1325195-1325298
(-)
glycine
1323715-1325083 (-)
ASU2_05980
Na+/alanine symporter
ASU2_05980
Operon
DOOR ID:
1162882
ASU2_05960,
ASU2_05965,
ASU2_05970,
ASU2_05975,
ASU2_05980
View Structure
Genome:
Actinobacillus suis H91-0380
(
NC_018690.1
);
Phylum:
Gammaproteobacteria
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threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018690.1";i:2;s:29:"Actinobacillus suis H91-0380 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"766235-766429";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"764506-764983";i:10;s:1:"-";i:11;s:10:"ASU2_03605";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:10:"ASU2_03605";i:14;s:6:"Operon";i:15;s:7:"1162777";i:16;s:54:"ASU2_03585;ASU2_03590;ASU2_03595;ASU2_03600;ASU2_03605";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018690.1";i:2;s:29:"Actinobacillus suis H91-0380 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"767746-767916";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"767934-770409";i:10;s:1:"+";i:11;s:10:"ASU2_03620";i:12;s:32:"Trimethylamine-N-oxide reductase";i:13;s:10:"ASU2_03620";i:14;s:11:"Single gene";i:15;s:7:"3936881";i:16;s:10:"ASU2_03620";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018690.1";i:2;s:29:"Actinobacillus suis H91-0380 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"959912-960004";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"958893-959694";i:10;s:1:"-";i:11;s:10:"ASU2_04400";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"ASU2_04400";i:14;s:6:"Operon";i:15;s:7:"1162808";i:16;s:38:"ASU2_04390(thiE);ASU2_04395;ASU2_04400";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018690.1";i:2;s:29:"Actinobacillus suis H91-0380 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1040562-1040734";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1038921-1040430";i:10;s:1:"-";i:11;s:10:"ASU2_04720";i:12;s:34:"Putative integral membrane protein";i:13;s:10:"ASU2_04720";i:14;s:11:"Single gene";i:15;s:7:"3936959";i:16;s:10:"ASU2_04720";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018690.1";i:2;s:29:"Actinobacillus suis H91-0380 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1126655-1126780";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1125435-1126521";i:10;s:1:"-";i:11;s:10:"ASU2_05085";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"ASU2_05085";i:14;s:6:"Operon";i:15;s:7:"1162840";i:16;s:49:"ASU2_05070(ribH);ASU2_05075;ASU2_05080;ASU2_05085";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018690.1";i:2;s:29:"Actinobacillus suis H91-0380 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1283987-1284048";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1284051-1284720";i:10;s:1:"+";i:11;s:10:"ASU2_05805";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:10:"ASU2_05805";i:14;s:6:"Operon";i:15;s:7:"1162875";i:16;s:43:"ASU2_05800;ASU2_05805;ASU2_05810;ASU2_05815";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018690.1";i:2;s:29:"Actinobacillus suis H91-0380 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1325195-1325298";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1323715-1325083";i:10;s:1:"-";i:11;s:10:"ASU2_05980";i:12;s:21:"Na+/alanine symporter";i:13;s:10:"ASU2_05980";i:14;s:6:"Operon";i:15;s:7:"1162882";i:16;s:54:"ASU2_05960;ASU2_05965;ASU2_05970;ASU2_05975;ASU2_05980";i:17;s:0:"";i:18;s:15:"View Structure ";}}
