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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
159222-159383
(+)
glmS
159441-161238 (+)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Eab7_0142
Single gene
DOOR ID:
3927836
Eab7_0142
(glmS)
View Structure
2
201614-201798
(+)
lysine
201928-203413 (+)
lysP
Lysine-specific permease
Eab7_0188
Single gene
DOOR ID:
3927853
Eab7_0188
(lysP)
View Structure
3
220085-220184
(+)
purine
220258-220843 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
Eab7_0207
Operon
DOOR ID:
1159229
Eab7_0207
(xpt)
,
Eab7_0208
(pbuX)
View Structure
4
386698-386801
(-)
SAM
386062-386593 (-)
Eab7_0380
Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (1) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase)
Eab7_0380
Single gene
DOOR ID:
3927927
Eab7_0380
View Structure
5
391120-391208
(+)
ykkC-yxkD
391265-391595 (+)
ykkC
Multidrug resistance protein ykkC
Eab7_0385
Operon
DOOR ID:
1159267
Eab7_0385
(ykkC)
,
Eab7_0386
(ykkD1)
View Structure
6
408906-409007
(-)
SAM
407634-408825 (-)
mtnW
2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)
Eab7_0405
Operon
DOOR ID:
1159271
Eab7_0402
(mtnD)
,
Eab7_0403
(mtnB)
,
Eab7_0404
(mtnX)
,
Eab7_0405
(mtnW)
View Structure
7
409216-409318
(+)
SAM
409396-410566 (+)
mtnK
Methylthioribose kinase (MTR kinase) (00)
Eab7_0407
Operon
DOOR ID:
1159272
Eab7_0407
(mtnK)
,
Eab7_0408
(mtnA)
,
Eab7_0409,
Eab7_0410,
Eab7_0411
View Structure
8
419763-419864
(+)
purine
419968-421513 (+)
guaA
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
Eab7_0415
Single gene
DOOR ID:
3927938
Eab7_0415
(guaA)
View Structure
9
425841-425942
(+)
purine
426028-427381 (+)
pbuG
Guanine/hypoxanthine permease pbuG
Eab7_0420
Single gene
DOOR ID:
3927942
Eab7_0420
(pbuG)
View Structure
10
434046-434147
(+)
purine
434238-434730 (+)
purE
N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)
Eab7_0423
Operon
DOOR ID:
1159274
Eab7_0423
(purE)
,
Eab7_0424
(purK)
,
Eab7_0425
(purB)
,
Eab7_0426
(purC)
,
Eab7_0427,
Eab7_0428
(purQ)
,
Eab7_0429
(purL)
,
Eab7_0430
(purF)
,
Eab7_0431
(purM)
,
Eab7_0432
(purN)
,
Eab7_0433
(purH)
,
Eab7_0434
(purD)
View Structure
11
478527-478704
(+)
lysine
478817-480017 (+)
lysC
Aspartokinase
Eab7_0462
Operon
DOOR ID:
1159283
Eab7_0462
(lysC)
,
Eab7_0463
(asd)
,
Eab7_0464
(dapA)
,
Eab7_0465
(dapB)
,
Eab7_0466
(dapH)
,
Eab7_0467
(ilvK)
View Structure
12
536643-536753
(+)
TPP
536869-537679 (+)
thiD
Phosphomethylpyrimidine kinase
Eab7_0516
Operon
DOOR ID:
1159289
Eab7_0516
(thiD)
,
Eab7_0517
(thiM)
,
Eab7_0518
(thiE)
,
Eab7_0519
View Structure
13
941685-941790
(+)
TPP
941863-942580 (+)
Eab7_0906
Aminopyrimidine aminohydrolase
Eab7_0906
Single gene
DOOR ID:
3928121
Eab7_0906
View Structure
14
1180540-1180642
(+)
TPP
1180733-1181330 (+)
Eab7_1154
Transcriptional regulator TenI
Eab7_1154
Operon
DOOR ID:
1159426
Eab7_1154,
Eab7_1155,
Eab7_1156,
Eab7_1157
(thiG)
View Structure
15
1426898-1426997
(-)
TPP
1426217-1426793 (-)
ykoE
HMP/thiamine permease protein ykoE
Eab7_1460
Operon
DOOR ID:
1159481
Eab7_1458,
Eab7_1459,
Eab7_1460
(ykoE)
View Structure
16
1725857-1725963
(-)
TPP
1725233-1725794 (-)
thiT
Thiamine transporter ThiT
Eab7_1770
Operon
DOOR ID:
1159539
Eab7_1769,
Eab7_1770
(thiT)
View Structure
17
2093044-2093170
(-)
SAM
2091707-2092916 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Eab7_2131
Single gene
DOOR ID:
3928580
Eab7_2131
(metK)
View Structure
18
2127065-2127205
(+)
FMN
2127338-2127905 (+)
Eab7_2163
Riboflavin transporter
Eab7_2163
Single gene
DOOR ID:
3928596
Eab7_2163
View Structure
19
2147547-2147652
(-)
SAM
2146444-2147467 (-)
Eab7_2187
Methionine import ATP-binding protein MetN
Eab7_2187
Operon
DOOR ID:
1159623
Eab7_2185,
Eab7_2186,
Eab7_2187
View Structure
20
2340004-2340107
(+)
SAM
2340168-2341149 (+)
Eab7_2382
Methionine import ATP-binding protein MetN
Eab7_2382
Operon
DOOR ID:
1159663
Eab7_2382,
Eab7_2383,
Eab7_2384
View Structure
21
2359722-2359874
(-)
ydaO-yuaA
2357759-2359400 (-)
kdpA
Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)
Eab7_2394
Operon
DOOR ID:
1159665
Eab7_2391,
Eab7_2392
(kdpC)
,
Eab7_2393
(kdpB)
,
Eab7_2394
(kdpA)
View Structure
22
2494478-2494622
(-)
FMN
2493273-2494320 (-)
Eab7_2525
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Eab7_2525
Operon
DOOR ID:
1159685
Eab7_2521,
Eab7_2522
(ribH)
,
Eab7_2523,
Eab7_2524,
Eab7_2525
View Structure
23
2498624-2498727
(-)
SAM
2497506-2498541 (-)
Eab7_2530
Methionine import ATP-binding protein MetN
Eab7_2530
Operon
DOOR ID:
1159686
Eab7_2527,
Eab7_2528,
Eab7_2529,
Eab7_2530
View Structure
24
2498976-2499078
(+)
SAM
2499143-2499902 (+)
Eab7_2531
Esterase
Eab7_2531
Single gene
DOOR ID:
3928727
Eab7_2531
View Structure
25
2548277-2548360
(+)
c-di-GMP-I
2548385-2549195 (+)
Eab7_2581
Uncharacterized protein
Eab7_2581
single gene
DOOR ID:
3928758
Eab7_2581
View Structure
26
2594619-2594722
(+)
SAM
2594801-2596109 (+)
Eab7_2632
Na+/H+ antiporter NhaC
Eab7_2632
Single gene
DOOR ID:
3928774
Eab7_2632
View Structure
27
2734496-2734601
(-)
SAM
2733364-2734423 (-)
Eab7_2774
Alkanesulfonate monooxygenase
Eab7_2774
Operon
DOOR ID:
1159734
Eab7_2773,
Eab7_2774
View Structure
28
2748298-2748473
(+)
lysine
2748580-2750164 (+)
Eab7_2791
Na+/H+ antiporter NhaC
Eab7_2791
Single gene
DOOR ID:
3928850
Eab7_2791
View Structure
29
2761112-2761213
(-)
SAM
2759629-2761030 (-)
Eab7_2802
Amino acid permease-associated region
Eab7_2802
Operon
DOOR ID:
1159738
Eab7_2801,
Eab7_2802
View Structure
30
2777176-2777251
(-)
glycine
2775645-2777013 (-)
Eab7_2814
Amino acid permease-associated region
Eab7_2814
Single gene
DOOR ID:
3928863
Eab7_2814
View Structure
Genome:
Exiguobacterium antarcticum B7
(
NC_018665.1
);
Phylum:
Firmicutes
a:31:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"159222-159383";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"159441-161238";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Eab7_0142";i:14;s:11:"Single gene";i:15;s:7:"3927836";i:16;s:15:"Eab7_0142(glmS)";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"201614-201798";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"201928-203413";i:10;s:1:"+";i:11;s:4:"lysP";i:12;s:24:"Lysine-specific permease";i:13;s:9:"Eab7_0188";i:14;s:11:"Single gene";i:15;s:7:"3927853";i:16;s:15:"Eab7_0188(lysP)";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"220085-220184";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"220258-220843";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"Eab7_0207";i:14;s:6:"Operon";i:15;s:7:"1159229";i:16;s:30:"Eab7_0207(xpt);Eab7_0208(pbuX)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"386698-386801";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"386062-386593";i:10;s:1:"-";i:11;s:9:"Eab7_0380";i:12;s:156:"Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (1) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase)";i:13;s:9:"Eab7_0380";i:14;s:11:"Single gene";i:15;s:7:"3927927";i:16;s:9:"Eab7_0380";i:17;s:50:"cellular protein modification process [GO:0006464]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"391120-391208";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:13:"391265-391595";i:10;s:1:"+";i:11;s:4:"ykkC";i:12;s:33:"Multidrug resistance protein ykkC";i:13;s:9:"Eab7_0385";i:14;s:6:"Operon";i:15;s:7:"1159267";i:16;s:32:"Eab7_0385(ykkC);Eab7_0386(ykkD1)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"408906-409007";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"407634-408825";i:10;s:1:"-";i:11;s:4:"mtnW";i:12;s:100:"2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)";i:13;s:9:"Eab7_0405";i:14;s:6:"Operon";i:15;s:7:"1159271";i:16;s:63:"Eab7_0402(mtnD);Eab7_0403(mtnB);Eab7_0404(mtnX);Eab7_0405(mtnW)";i:17;s:149:"carbon fixation [GO:0015977]; L-methionine salvage from methylthioadenosine [GO:0019509]; L-methionine salvage from S-adenosylmethionine [GO:0019284]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"409216-409318";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"409396-410566";i:10;s:1:"+";i:11;s:4:"mtnK";i:12;s:41:"Methylthioribose kinase (MTR kinase) (00)";i:13;s:9:"Eab7_0407";i:14;s:6:"Operon";i:15;s:7:"1159272";i:16;s:61:"Eab7_0407(mtnK);Eab7_0408(mtnA);Eab7_0409;Eab7_0410;Eab7_0411";i:17;s:119:"L-methionine salvage from methylthioadenosine [GO:0019509]; L-methionine salvage from S-adenosylmethionine [GO:0019284]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"419763-419864";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"419968-421513";i:10;s:1:"+";i:11;s:4:"guaA";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:9:"Eab7_0415";i:14;s:11:"Single gene";i:15;s:7:"3927938";i:16;s:15:"Eab7_0415(guaA)";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"425841-425942";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"426028-427381";i:10;s:1:"+";i:11;s:4:"pbuG";i:12;s:34:"Guanine/hypoxanthine permease pbuG";i:13;s:9:"Eab7_0420";i:14;s:11:"Single gene";i:15;s:7:"3927942";i:16;s:15:"Eab7_0420(pbuG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"434046-434147";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"434238-434730";i:10;s:1:"+";i:11;s:4:"purE";i:12;s:117:"N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)";i:13;s:9:"Eab7_0423";i:14;s:6:"Operon";i:15;s:7:"1159274";i:16;s:185:"Eab7_0423(purE);Eab7_0424(purK);Eab7_0425(purB);Eab7_0426(purC);Eab7_0427;Eab7_0428(purQ);Eab7_0429(purL);Eab7_0430(purF);Eab7_0431(purM);Eab7_0432(purN);Eab7_0433(purH);Eab7_0434(purD)";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"478527-478704";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"478817-480017";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"Eab7_0462";i:14;s:6:"Operon";i:15;s:7:"1159283";i:16;s:94:"Eab7_0462(lysC);Eab7_0463(asd);Eab7_0464(dapA);Eab7_0465(dapB);Eab7_0466(dapH);Eab7_0467(ilvK)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"536643-536753";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"536869-537679";i:10;s:1:"+";i:11;s:4:"thiD";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:9:"Eab7_0516";i:14;s:6:"Operon";i:15;s:7:"1159289";i:16;s:57:"Eab7_0516(thiD);Eab7_0517(thiM);Eab7_0518(thiE);Eab7_0519";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_018665.1";i:2;s:31:"Exiguobacterium antarcticum B7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"941685-941790";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"941863-942580";i:10;s:1:"+";i:11;s:9:"Eab7_0906";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"Eab7_0906";i:14;s:11:"Single gene";i:15;s:7:"3928121";i:16;s:9:"Eab7_0906";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View 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