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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
761877-762025
(+)
FMN
762128-762782 (+)
ribB
O3O_21905
Single gene
DOOR ID:
3926429
O3O_21905
(ribB)
View Structure
2
1866918-1867014
(+)
TPP
1867048-1867837 (+)
O3O_16695
O3O_16695
Operon
DOOR ID:
1157968
O3O_16695,
O3O_16690,
O3O_16685,
O3O_16680
View Structure
3
2241166-2241267
(-)
yybP-ykoY
2240468-2241035 (-)
O3O_14780
O3O_14780
Single gene
DOOR ID:
3925966
O3O_14780
View Structure
4
3619748-3619892
(-)
MOCO
3618236-3618749 (-)
O3O_07840
O3O_07840
Operon
DOOR ID:
1158303
O3O_07855
(moaE)
,
O3O_07850
(moaD)
,
O3O_07845
(moaC)
,
O3O_07840,
O3O_07835
(moaA)
View Structure
5
4411197-4411296
(+)
TPP
4411326-4412310 (+)
tbpA
O3O_04170
Operon
DOOR ID:
1158461
O3O_04170
(tbpA)
,
O3O_04165
(thiP)
,
O3O_04160
(thiQ)
View Structure
6
4667320-4667435
(-)
Mg sensor
4664529-4667226 (-)
O3O_02955
O3O_02955
Single gene
DOOR ID:
3925121
O3O_02955
View Structure
7
4759299-4759345
(-)
mini-ykkC
4758963-4759281 (-)
O3O_02495
O3O_02495
Single gene
DOOR ID:
3925079
O3O_02495
View Structure
8
4945825-4946021
(+)
lysine
4946112-4947462 (+)
O3O_01600
O3O_01600
Single gene
DOOR ID:
3924997
O3O_01600
View Structure
9
4985299-4985399
(+)
TPP
4985479-4987375 (+)
O3O_01460
O3O_01460
Operon
DOOR ID:
1158568
O3O_01460,
O3O_01455,
O3O_01450,
O3O_01445,
O3O_01440
(thiG)
,
O3O_01435
(thiH)
View Structure
10
5017919-5018109
(-)
cobalamin
5016009-5017854 (-)
btuB
O3O_01355
Operon
DOOR ID:
1158573
O3O_01360,
O3O_01355
(btuB)
View Structure
Genome:
Escherichia coli O104:H4 str. 2009EL-2071
(
NC_018661.1
);
Phylum:
Gammaproteobacteria
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