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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
768353-768501
(+)
FMN
768604-769258 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
O3K_03740
Single gene
DOOR ID:
3923199
O3K_03740
(ribB)
View Structure
2
1871187-1871283
(+)
TPP
1871317-1872106 (+)
O3K_08925
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
O3K_08925
Operon
DOOR ID:
1301042
O3K_08925,
O3K_08930,
O3K_08935,
O3K_08940
View Structure
3
2242837-2242938
(-)
yybP-ykoY
2242139-2242706 (-)
rrmA
Probable manganese efflux pump MntP
O3K_10845
Single gene
DOOR ID:
3923654
O3K_10845
View Structure
4
3570128-3570272
(-)
MOCO
3568616-3569129 (-)
O3K_17445
Molybdenum cofactor biosynthesis protein B
O3K_17445
Operon
DOOR ID:
1301361
O3K_17430
(moaE)
,
O3K_17435
(moaD)
,
O3K_17440
(moaC)
,
O3K_17445,
O3K_17450
(moaA)
View Structure
5
4374516-4374615
(+)
TPP
4374645-4375629 (+)
tbpA
Thiamine transporter substrate binding subunit
O3K_21215
Operon
DOOR ID:
1301522
O3K_21215
(tbpA)
,
O3K_21220
(thiP)
,
O3K_21225
(thiQ)
View Structure
6
4629722-4629837
(-)
Mg sensor
4626931-4629628 (-)
O3K_22430
Magnesium-transporting ATPase MgtA
O3K_22430
Single gene
DOOR ID:
3924499
O3K_22430
View Structure
7
4721478-4721524
(-)
mini-ykkC
4721142-4721460 (-)
O3K_22890
O3K_22890
Single gene
DOOR ID:
3924541
O3K_22890
View Structure
8
4906075-4906271
(+)
lysine
4906362-4907712 (+)
O3K_23745
Aspartokinase
O3K_23745
Single gene
DOOR ID:
3924620
O3K_23745
View Structure
9
4945642-4945742
(+)
TPP
4945822-4947718 (+)
O3K_23885
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
O3K_23885
Operon
DOOR ID:
1301626
O3K_23885,
O3K_23890,
O3K_23895,
O3K_23900,
O3K_23905
(thiG)
,
O3K_23910
(thiH)
View Structure
10
4978355-4978545
(-)
cobalamin
4976445-4978290 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
O3K_23990
Operon
DOOR ID:
1301631
O3K_23985,
O3K_23990
(btuB)
View Structure
Genome:
Escherichia coli O104:H4 str. 2011C-3493
(
NC_018658.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"768353-768501";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"768604-769258";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"O3K_03740";i:14;s:11:"Single gene";i:15;s:7:"3923199";i:16;s:15:"O3K_03740(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1871187-1871283";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1871317-1872106";i:10;s:1:"+";i:11;s:9:"O3K_08925";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"O3K_08925";i:14;s:6:"Operon";i:15;s:7:"1301042";i:16;s:39:"O3K_08925;O3K_08930;O3K_08935;O3K_08940";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2242837-2242938";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2242139-2242706";i:10;s:1:"-";i:11;s:4:"rrmA";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:9:"O3K_10845";i:14;s:11:"Single gene";i:15;s:7:"3923654";i:16;s:9:"O3K_10845";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3570128-3570272";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3568616-3569129";i:10;s:1:"-";i:11;s:9:"O3K_17445";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"O3K_17445";i:14;s:6:"Operon";i:15;s:7:"1301361";i:16;s:73:"O3K_17430(moaE);O3K_17435(moaD);O3K_17440(moaC);O3K_17445;O3K_17450(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4374516-4374615";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4374645-4375629";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:46:"Thiamine transporter substrate binding subunit";i:13;s:9:"O3K_21215";i:14;s:6:"Operon";i:15;s:7:"1301522";i:16;s:47:"O3K_21215(tbpA);O3K_21220(thiP);O3K_21225(thiQ)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4629722-4629837";i:6;s:1:"-";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4626931-4629628";i:10;s:1:"-";i:11;s:9:"O3K_22430";i:12;s:35:"Magnesium-transporting ATPase MgtA ";i:13;s:9:"O3K_22430";i:14;s:11:"Single gene";i:15;s:7:"3924499";i:16;s:9:"O3K_22430";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4721478-4721524";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4721142-4721460";i:10;s:1:"-";i:11;s:9:"O3K_22890";i:12;s:0:"";i:13;s:9:"O3K_22890";i:14;s:11:"Single gene";i:15;s:7:"3924541";i:16;s:9:"O3K_22890";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4906075-4906271";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4906362-4907712";i:10;s:1:"+";i:11;s:9:"O3K_23745";i:12;s:14:"Aspartokinase ";i:13;s:9:"O3K_23745";i:14;s:11:"Single gene";i:15;s:7:"3924620";i:16;s:9:"O3K_23745";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4945642-4945742";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4945822-4947718";i:10;s:1:"+";i:11;s:9:"O3K_23885";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"O3K_23885";i:14;s:6:"Operon";i:15;s:7:"1301626";i:16;s:71:"O3K_23885;O3K_23890;O3K_23895;O3K_23900;O3K_23905(thiG);O3K_23910(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018658.1";i:2;s:41:"Escherichia coli O104:H4 str. 2011C-3493 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4978355-4978545";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4976445-4978290";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"O3K_23990";i:14;s:6:"Operon";i:15;s:7:"1301631";i:16;s:25:"O3K_23985;O3K_23990(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
