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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
139840-139942
(+)
SAM
140028-141603 (+)
LMOL312_0140
LMOL312_0140
Single gene
DOOR ID:
3919668
LMOL312_0140
View Structure
2
317035-317154
(-)
SAM
316104-316926 (-)
LMOL312_0292
LMOL312_0292
Operon
DOOR ID:
1155502
LMOL312_0288,
LMOL312_0289,
LMOL312_0290,
LMOL312_0291,
LMOL312_0292
View Structure
3
338359-338464
(+)
TPP
338550-339225 (+)
LMOL312_0313
LMOL312_0313
Operon
DOOR ID:
1155507
LMOL312_0313,
LMOL312_0314
(thiM)
,
LMOL312_0315
(thiD-1)
,
LMOL312_0316
(thiE)
View Structure
4
614528-614629
(-)
purine
613138-614434 (-)
LMOL312_0581
LMOL312_0581
Single gene
DOOR ID:
3919861
LMOL312_0581
View Structure
5
641328-641428
(-)
SAM
639941-641219 (-)
cysD
LMOL312_0603
Operon
DOOR ID:
1155556
LMOL312_0602
(metX)
,
LMOL312_0603
(cysD)
View Structure
6
764797-764992
(+)
glmS
765077-766883 (+)
glmS
LMOL312_0738
Single gene
DOOR ID:
3919921
LMOL312_0738
(glmS)
View Structure
7
828137-828334
(-)
lysine
826586-828047 (-)
lysP
LMOL312_0798
Single gene
DOOR ID:
3919951
LMOL312_0798
(lysP)
View Structure
8
882996-883093
(+)
SAM
883192-884296 (+)
LMOL312_0845
LMOL312_0845
Single gene
DOOR ID:
3919979
LMOL312_0845
View Structure
9
908139-908186
(+)
PreQ1
908191-908680 (+)
LMOL312_0867
LMOL312_0867
Single gene
DOOR ID:
3919986
LMOL312_0867
View Structure
10
1022385-1022488
(+)
yybP-ykoY
1022586-1023354 (+)
LMOL312_0992
LMOL312_0992
Single gene
DOOR ID:
3920017
LMOL312_0992
View Structure
11
1161961-1162151
(+)
cobalamin
1162304-1163189 (-)
pocR
LMOL312_1137
Single gene
DOOR ID:
3920072
LMOL312_1137
(pocR)
View Structure
12
1180231-1180374
(+)
cobalamin
1180791-1181931 (+)
LMOL312_1159
LMOL312_1159
Single gene
DOOR ID:
3920074
LMOL312_1159
View Structure
13
1196977-1197154
(+)
cobalamin
1197315-1198674 (+)
cobB
LMOL312_1179
Operon
DOOR ID:
1155669
LMOL312_1179
(cobB)
,
LMOL312_1180
(cobD)
,
LMOL312_1181
(cobH)
,
LMOL312_1182
(cbiD)
,
LMOL312_1183
(cbiE)
,
LMOL312_1184
(cbiT)
,
LMOL312_1185
(cbiF)
View Structure
14
1356350-1356441
(+)
glycine
1356524-1357613 (+)
gcvT
LMOL312_1344
Operon
DOOR ID:
1155703
LMOL312_1344
(gcvT)
,
LMOL312_1345
(gcvP1)
,
LMOL312_1346
(gcvP2)
View Structure
15
1444669-1444779
(-)
TPP
1444040-1444601 (-)
LMOL312_1427
LMOL312_1427
Single gene
DOOR ID:
3920156
LMOL312_1427
View Structure
16
1702743-1702851
(-)
SAM
1701436-1702675 (-)
metK
LMOL312_1671
Single gene
DOOR ID:
3920227
LMOL312_1671
(metK)
View Structure
17
1725706-1725812
(-)
SAM
1723301-1725599 (-)
metE
LMOL312_1688
Operon
DOOR ID:
1155786
LMOL312_1685,
LMOL312_1686
(metC-1)
,
LMOL312_1687
(metC-2)
,
LMOL312_1688
(metE)
View Structure
18
1946768-1946868
(-)
purine
1944793-1946101 (-)
pbuX
LMOL312_1894
Operon
DOOR ID:
1155827
LMOL312_1894
(pbuX)
,
LMOL312_1895
(xpt)
View Structure
19
2014730-2014852
(-)
FMN
2013928-2014540 (-)
LMOL312_1955
LMOL312_1955
Single gene
DOOR ID:
3920313
LMOL312_1955
View Structure
20
2462659-2462777
(-)
SAM
2461546-2462569 (-)
metN
LMOL312_2377
Operon
DOOR ID:
1155931
LMOL312_2375,
LMOL312_2376
(metI)
,
LMOL312_2377
(metN)
View Structure
21
2735744-2735910
(-)
ykoK
2732888-2735459 (-)
mgtA
LMOL312_2654
Operon
DOOR ID:
1155992
LMOL312_2652,
LMOL312_2653
(ftsW)
,
LMOL312_2654
(mgtA)
View Structure
Genome:
Listeria monocytogenes L312
(
NC_018642.1
);
Phylum:
Firmicutes
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L312";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2014730-2014852";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2013928-2014540";i:10;s:1:"-";i:11;s:12:"LMOL312_1955";i:12;s:0:"";i:13;s:12:"LMOL312_1955";i:14;s:11:"Single gene";i:15;s:7:"3920313";i:16;s:12:"LMOL312_1955";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_018642.1";i:2;s:27:"Listeria monocytogenes L312";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2462659-2462777";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2461546-2462569";i:10;s:1:"-";i:11;s:4:"metN";i:12;s:0:"";i:13;s:12:"LMOL312_2377";i:14;s:6:"Operon";i:15;s:7:"1155931";i:16;s:50:"LMOL312_2375;LMOL312_2376(metI);LMOL312_2377(metN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_018642.1";i:2;s:27:"Listeria monocytogenes L312";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2735744-2735910";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2732888-2735459";i:10;s:1:"-";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:12:"LMOL312_2654";i:14;s:6:"Operon";i:15;s:7:"1155992";i:16;s:50:"LMOL312_2652;LMOL312_2653(ftsW);LMOL312_2654(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}