About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
773805-773917
(-)
TPP
771994-773635 (-)
oppA
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein
B2904_orf764
Single gene
DOOR ID:
3915480
B2904_orf764
(oppA)
View Structure
2
1800561-1800665
(-)
TPP
1799104-1800457 (-)
B2904_orf1740
Nucleoside recognition domain-containing protein
B2904_orf1740
Single gene
DOOR ID:
3915793
B2904_orf1740
View Structure
3
2069012-2069149
(+)
cobalamin
2069222-2069699 (+)
B2904_orf2020
B2904_orf2020
Operon
DOOR ID:
1153547
B2904_orf2020,
B2904_orf2021,
B2904_orf2022,
B2904_orf2023
(btuB)
View Structure
4
2307970-2308066
(-)
purine
2306591-2307950 (-)
B2904_orf2249
Hydroxydechloroatrazine ethylaminohydrolase
B2904_orf2249
Single gene
DOOR ID:
3915960
B2904_orf2249
View Structure
5
2587016-2587153
(-)
FMN
2585779-2586877 (-)
B2904_orf2513
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
B2904_orf2513
Single gene
DOOR ID:
3916062
B2904_orf2513
View Structure
Genome:
Brachyspira pilosicoli B2904
(
NC_018607.1
);
Phylum:
Spirochaetia
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018607.1";i:2;s:29:"Brachyspira pilosicoli B2904 ";i:3;s:12:"Spirochaetia";i:4;s:6:"203692";i:5;s:13:"773805-773917";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"771994-773635";i:10;s:1:"-";i:11;s:4:"oppA";i:12;s:69:"Oligopeptide ABC transporter periplasmic oligopeptide-binding protein";i:13;s:12:"B2904_orf764";i:14;s:11:"Single gene";i:15;s:7:"3915480";i:16;s:18:"B2904_orf764(oppA)";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018607.1";i:2;s:29:"Brachyspira pilosicoli B2904 ";i:3;s:12:"Spirochaetia";i:4;s:6:"203692";i:5;s:15:"1800561-1800665";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1799104-1800457";i:10;s:1:"-";i:11;s:13:"B2904_orf1740";i:12;s:48:"Nucleoside recognition domain-containing protein";i:13;s:13:"B2904_orf1740";i:14;s:11:"Single gene";i:15;s:7:"3915793";i:16;s:13:"B2904_orf1740";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018607.1";i:2;s:29:"Brachyspira pilosicoli B2904 ";i:3;s:12:"Spirochaetia";i:4;s:6:"203692";i:5;s:15:"2069012-2069149";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2069222-2069699";i:10;s:1:"+";i:11;s:13:"B2904_orf2020";i:12;s:0:"";i:13;s:13:"B2904_orf2020";i:14;s:6:"Operon";i:15;s:7:"1153547";i:16;s:61:"B2904_orf2020;B2904_orf2021;B2904_orf2022;B2904_orf2023(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018607.1";i:2;s:29:"Brachyspira pilosicoli B2904 ";i:3;s:12:"Spirochaetia";i:4;s:6:"203692";i:5;s:15:"2307970-2308066";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2306591-2307950";i:10;s:1:"-";i:11;s:13:"B2904_orf2249";i:12;s:43:"Hydroxydechloroatrazine ethylaminohydrolase";i:13;s:13:"B2904_orf2249";i:14;s:11:"Single gene";i:15;s:7:"3915960";i:16;s:13:"B2904_orf2249";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018607.1";i:2;s:29:"Brachyspira pilosicoli B2904 ";i:3;s:12:"Spirochaetia";i:4;s:6:"203692";i:5;s:15:"2587016-2587153";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2585779-2586877";i:10;s:1:"-";i:11;s:13:"B2904_orf2513";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:13:"B2904_orf2513";i:14;s:11:"Single gene";i:15;s:7:"3916062";i:16;s:13:"B2904_orf2513";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}