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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
133940-134042
(+)
SAM
134128-135703 (+)
LMOSLCC5850_0131
LMOSLCC5850_0131
Single gene
DOOR ID:
3912013
LMOSLCC5850_0131
View Structure
2
305345-305464
(-)
SAM
304412-305234 (-)
LMOSLCC5850_0283
LMOSLCC5850_0283
Operon
DOOR ID:
1377612
LMOSLCC5850_0279,
LMOSLCC5850_0280,
LMOSLCC5850_0281,
LMOSLCC5850_0282,
LMOSLCC5850_0283
View Structure
3
341409-341514
(+)
TPP
341600-342275 (+)
LMOSLCC5850_0318
LMOSLCC5850_0318
Operon
DOOR ID:
1377620
LMOSLCC5850_0318,
LMOSLCC5850_0319
(thiM)
,
LMOSLCC5850_0320
(thiD-1)
,
LMOSLCC5850_0321
(thiE)
View Structure
4
590717-590818
(-)
purine
589327-590623 (-)
LMOSLCC5850_0566
LMOSLCC5850_0566
Single gene
DOOR ID:
3912209
LMOSLCC5850_0566
View Structure
5
617508-617608
(-)
SAM
616121-617399 (-)
cysD
LMOSLCC5850_0588
Operon
DOOR ID:
1377666
LMOSLCC5850_0587
(metX)
,
LMOSLCC5850_0588
(cysD)
View Structure
6
738324-738518
(+)
glmS
738603-740409 (+)
glmS
LMOSLCC5850_0729
Single gene
DOOR ID:
3912267
LMOSLCC5850_0729
(glmS)
View Structure
7
808384-808581
(-)
lysine
806833-808294 (-)
lysP
LMOSLCC5850_0798
Single gene
DOOR ID:
3912299
LMOSLCC5850_0798
(lysP)
View Structure
8
863315-863412
(+)
SAM
863471-864611 (+)
LMOSLCC5850_0843
LMOSLCC5850_0843
Single gene
DOOR ID:
3912327
LMOSLCC5850_0843
View Structure
9
888482-888529
(+)
PreQ1
888534-889023 (+)
LMOSLCC5850_0867
LMOSLCC5850_0867
Single gene
DOOR ID:
3912336
LMOSLCC5850_0867
View Structure
10
1002789-1002892
(+)
yybP-ykoY
1002990-1003758 (+)
LMOSLCC5850_0997
LMOSLCC5850_0997
Single gene
DOOR ID:
3912366
LMOSLCC5850_0997
View Structure
11
1138287-1138477
(+)
cobalamin
1138627-1139512 (-)
pocR
LMOSLCC5850_1139
Single gene
DOOR ID:
3912412
LMOSLCC5850_1139
(pocR)
View Structure
12
1156552-1156695
(+)
cobalamin
1157111-1158251 (+)
LMOSLCC5850_1161
LMOSLCC5850_1161
Single gene
DOOR ID:
3912414
LMOSLCC5850_1161
View Structure
13
1174955-1175132
(+)
cobalamin
1175293-1176652 (+)
cobB
LMOSLCC5850_1181
Operon
DOOR ID:
1377786
LMOSLCC5850_1181
(cobB)
,
LMOSLCC5850_1182
(cobD)
,
LMOSLCC5850_1183
(cobH)
,
LMOSLCC5850_1184
(cbiD)
,
LMOSLCC5850_1185
(cbiE)
,
LMOSLCC5850_1186
(cbiT)
,
LMOSLCC5850_1187
(cbiF)
View Structure
14
1374855-1374946
(+)
glycine
1375029-1376118 (+)
gcvT
LMOSLCC5850_1407
Operon
DOOR ID:
1377833
LMOSLCC5850_1407
(gcvT)
,
LMOSLCC5850_1408
(gcvP1)
,
LMOSLCC5850_1409
(gcvP2)
View Structure
15
1463178-1463288
(-)
TPP
1462548-1463109 (-)
LMOSLCC5850_1488
LMOSLCC5850_1488
Single gene
DOOR ID:
3912499
LMOSLCC5850_1488
View Structure
16
1718220-1718328
(-)
SAM
1716912-1718112 (-)
metK
LMOSLCC5850_1727
Single gene
DOOR ID:
3912565
LMOSLCC5850_1727
(metK)
View Structure
17
1741169-1741275
(-)
SAM
1738764-1741062 (-)
metE
LMOSLCC5850_1744
Operon
DOOR ID:
1377913
LMOSLCC5850_1741,
LMOSLCC5850_1742
(metC-1)
,
LMOSLCC5850_1743
(metC-2)
,
LMOSLCC5850_1744
(metE)
View Structure
18
1957982-1958082
(-)
purine
1957321-1957900 (-)
xpt
LMOSLCC5850_1947
Operon
DOOR ID:
1377955
LMOSLCC5850_1946
(pbuX)
,
LMOSLCC5850_1947
(xpt)
View Structure
19
2019648-2019770
(-)
FMN
2018846-2019458 (-)
LMOSLCC5850_2006
LMOSLCC5850_2006
Single gene
DOOR ID:
3912644
LMOSLCC5850_2006
View Structure
20
2449521-2449639
(-)
SAM
2448408-2449431 (-)
metN
LMOSLCC5850_2421
Operon
DOOR ID:
1378058
LMOSLCC5850_2419,
LMOSLCC5850_2420
(metI)
,
LMOSLCC5850_2421
(metN)
View Structure
21
2732925-2733091
(-)
ykoK
2730069-2732640 (-)
mgtA
LMOSLCC5850_2702
Operon
DOOR ID:
1378122
LMOSLCC5850_2700,
LMOSLCC5850_2701
(ftsW)
,
LMOSLCC5850_2702
(mgtA)
View Structure
Genome:
Listeria monocytogenes SLCC5850
(
NC_018592.1
);
Phylum:
Firmicutes
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