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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
145460-145562
(+)
SAM
145648-147223 (+)
LMOSLCC2482_0148
LMOSLCC2482_0148
Single gene
DOOR ID:
3910963
LMOSLCC2482_0148
View Structure
2
319584-319703
(-)
SAM
318653-319475 (-)
LMOSLCC2482_0293
LMOSLCC2482_0293
Operon
DOOR ID:
1151348
LMOSLCC2482_0289,
LMOSLCC2482_0290,
LMOSLCC2482_0291,
LMOSLCC2482_0292,
LMOSLCC2482_0293
View Structure
3
348202-348307
(+)
TPP
348393-349068 (+)
LMOSLCC2482_0320
LMOSLCC2482_0320
Operon
DOOR ID:
1151355
LMOSLCC2482_0320,
LMOSLCC2482_0321
(thiM)
,
LMOSLCC2482_0322
(thiD-1)
,
LMOSLCC2482_0323
(thiE)
View Structure
4
614311-614412
(-)
purine
612921-614217 (-)
LMOSLCC2482_0575
LMOSLCC2482_0575
Single gene
DOOR ID:
3911158
LMOSLCC2482_0575
View Structure
5
641116-641216
(-)
SAM
639729-641007 (-)
cysD
LMOSLCC2482_0597
Operon
DOOR ID:
1151402
LMOSLCC2482_0596
(metX)
,
LMOSLCC2482_0597
(cysD)
View Structure
6
801492-801687
(+)
glmS
801771-803577 (+)
glmS
LMOSLCC2482_0782
Single gene
DOOR ID:
3911221
LMOSLCC2482_0782
(glmS)
View Structure
7
864916-865113
(-)
lysine
863365-864826 (-)
lysP
LMOSLCC2482_0842
Single gene
DOOR ID:
3911251
LMOSLCC2482_0842
(lysP)
View Structure
8
917787-917884
(+)
SAM
917978-919082 (+)
LMOSLCC2482_0886
LMOSLCC2482_0886
Single gene
DOOR ID:
3911278
LMOSLCC2482_0886
View Structure
9
942926-942973
(+)
PreQ1
942978-943467 (+)
LMOSLCC2482_0909
LMOSLCC2482_0909
Single gene
DOOR ID:
3911286
LMOSLCC2482_0909
View Structure
10
1056236-1056339
(+)
yybP-ykoY
1056437-1057205 (+)
LMOSLCC2482_1038
LMOSLCC2482_1038
Single gene
DOOR ID:
3911318
LMOSLCC2482_1038
View Structure
11
1194932-1195122
(+)
cobalamin
1195275-1196160 (-)
pocR
LMOSLCC2482_1188
Single gene
DOOR ID:
3911366
LMOSLCC2482_1188
(pocR)
View Structure
12
1213202-1213345
(+)
cobalamin
1213762-1214902 (+)
LMOSLCC2482_1211
LMOSLCC2482_1211
Single gene
DOOR ID:
3911369
LMOSLCC2482_1211
View Structure
13
1231608-1231785
(+)
cobalamin
1231946-1233305 (+)
cobB
LMOSLCC2482_1232
Operon
DOOR ID:
1151531
LMOSLCC2482_1232
(cobB)
,
LMOSLCC2482_1233
(cobD)
,
LMOSLCC2482_1234
(cobH)
,
LMOSLCC2482_1235
(cbiD)
,
LMOSLCC2482_1236
(cbiE)
,
LMOSLCC2482_1237
(cbiT)
,
LMOSLCC2482_1238
(cbiF)
View Structure
14
1390982-1391073
(+)
glycine
1391156-1392245 (+)
gcvT
LMOSLCC2482_1400
Operon
DOOR ID:
1151564
LMOSLCC2482_1400
(gcvT)
,
LMOSLCC2482_1401
(gcvP1)
,
LMOSLCC2482_1402
(gcvP2)
View Structure
15
1479306-1479416
(-)
TPP
1478677-1479238 (-)
LMOSLCC2482_1484
LMOSLCC2482_1484
Single gene
DOOR ID:
3911458
LMOSLCC2482_1484
View Structure
16
1737385-1737493
(-)
SAM
1736054-1737317 (-)
metK
LMOSLCC2482_1727
Single gene
DOOR ID:
3911525
LMOSLCC2482_1727
(metK)
View Structure
17
1760331-1760437
(-)
SAM
1757926-1760224 (-)
metE
LMOSLCC2482_1745
Operon
DOOR ID:
1151647
LMOSLCC2482_1742,
LMOSLCC2482_1743
(metC-1)
,
LMOSLCC2482_1744
(metC-2)
,
LMOSLCC2482_1745
(metE)
View Structure
18
1976382-1976482
(-)
purine
1974407-1975715 (-)
pbuX
LMOSLCC2482_1945
Operon
DOOR ID:
1151688
LMOSLCC2482_1945
(pbuX)
,
LMOSLCC2482_1946
(xpt)
View Structure
19
2044348-2044470
(-)
FMN
2043546-2044158 (-)
LMOSLCC2482_2008
LMOSLCC2482_2008
Single gene
DOOR ID:
3911607
LMOSLCC2482_2008
View Structure
20
2471739-2471857
(-)
SAM
2470626-2471649 (-)
metN
LMOSLCC2482_2420
Operon
DOOR ID:
1151791
LMOSLCC2482_2418,
LMOSLCC2482_2419
(metI)
,
LMOSLCC2482_2420
(metN)
View Structure
21
2755894-2756060
(-)
ykoK
2753038-2755609 (-)
mgtA
LMOSLCC2482_2707
Operon
DOOR ID:
1151854
LMOSLCC2482_2705,
LMOSLCC2482_2706
(ftsW)
,
LMOSLCC2482_2707
(mgtA)
View Structure
Genome:
Listeria monocytogenes serotype 7 str. SLCC2482
(
NC_018591.1
);
Phylum:
Firmicutes
a:22:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"145460-145562";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"145648-147223";i:10;s:1:"+";i:11;s:16:"LMOSLCC2482_0148";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_0148";i:14;s:11:"Single gene";i:15;s:7:"3910963";i:16;s:16:"LMOSLCC2482_0148";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"319584-319703";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"318653-319475";i:10;s:1:"-";i:11;s:16:"LMOSLCC2482_0293";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_0293";i:14;s:6:"Operon";i:15;s:7:"1151348";i:16;s:84:"LMOSLCC2482_0289;LMOSLCC2482_0290;LMOSLCC2482_0291;LMOSLCC2482_0292;LMOSLCC2482_0293";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. 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SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"641116-641216";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"639729-641007";i:10;s:1:"-";i:11;s:4:"cysD";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_0597";i:14;s:6:"Operon";i:15;s:7:"1151402";i:16;s:45:"LMOSLCC2482_0596(metX);LMOSLCC2482_0597(cysD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"801492-801687";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"801771-803577";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_0782";i:14;s:11:"Single gene";i:15;s:7:"3911221";i:16;s:22:"LMOSLCC2482_0782(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"864916-865113";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"863365-864826";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_0842";i:14;s:11:"Single gene";i:15;s:7:"3911251";i:16;s:22:"LMOSLCC2482_0842(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"917787-917884";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"917978-919082";i:10;s:1:"+";i:11;s:16:"LMOSLCC2482_0886";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_0886";i:14;s:11:"Single gene";i:15;s:7:"3911278";i:16;s:16:"LMOSLCC2482_0886";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"942926-942973";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"942978-943467";i:10;s:1:"+";i:11;s:16:"LMOSLCC2482_0909";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_0909";i:14;s:11:"Single gene";i:15;s:7:"3911286";i:16;s:16:"LMOSLCC2482_0909";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1056236-1056339";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1056437-1057205";i:10;s:1:"+";i:11;s:16:"LMOSLCC2482_1038";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_1038";i:14;s:11:"Single gene";i:15;s:7:"3911318";i:16;s:16:"LMOSLCC2482_1038";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1194932-1195122";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1195275-1196160";i:10;s:1:"-";i:11;s:4:"pocR";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_1188";i:14;s:11:"Single gene";i:15;s:7:"3911366";i:16;s:22:"LMOSLCC2482_1188(pocR)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1213202-1213345";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1213762-1214902";i:10;s:1:"+";i:11;s:16:"LMOSLCC2482_1211";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_1211";i:14;s:11:"Single gene";i:15;s:7:"3911369";i:16;s:16:"LMOSLCC2482_1211";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1231608-1231785";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1231946-1233305";i:10;s:1:"+";i:11;s:4:"cobB";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_1232";i:14;s:6:"Operon";i:15;s:7:"1151531";i:16;s:160:"LMOSLCC2482_1232(cobB);LMOSLCC2482_1233(cobD);LMOSLCC2482_1234(cobH);LMOSLCC2482_1235(cbiD);LMOSLCC2482_1236(cbiE);LMOSLCC2482_1237(cbiT);LMOSLCC2482_1238(cbiF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1390982-1391073";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1391156-1392245";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_1400";i:14;s:6:"Operon";i:15;s:7:"1151564";i:16;s:70:"LMOSLCC2482_1400(gcvT);LMOSLCC2482_1401(gcvP1);LMOSLCC2482_1402(gcvP2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. SLCC2482";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1479306-1479416";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1478677-1479238";i:10;s:1:"-";i:11;s:16:"LMOSLCC2482_1484";i:12;s:0:"";i:13;s:16:"LMOSLCC2482_1484";i:14;s:11:"Single gene";i:15;s:7:"3911458";i:16;s:16:"LMOSLCC2482_1484";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_018591.1";i:2;s:47:"Listeria monocytogenes serotype 7 str. 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