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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
129261-129363
(+)
SAM
129449-131024 (+)
LMOSLCC2376_0117
LMOSLCC2376_0117
Single gene
DOOR ID:
3909921
LMOSLCC2376_0117
View Structure
2
305480-305599
(-)
SAM
304549-305371 (-)
LMOSLCC2376_0263
LMOSLCC2376_0263
Operon
DOOR ID:
1150764
LMOSLCC2376_0259,
LMOSLCC2376_0260,
LMOSLCC2376_0261,
LMOSLCC2376_0262,
LMOSLCC2376_0263
View Structure
3
338065-338170
(+)
TPP
338256-338931 (+)
LMOSLCC2376_0292
LMOSLCC2376_0292
Operon
DOOR ID:
1150769
LMOSLCC2376_0292,
LMOSLCC2376_0293
(thiM)
,
LMOSLCC2376_0294
(thiD-1)
,
LMOSLCC2376_0295
(thiE)
View Structure
4
596155-596256
(-)
purine
594765-596061 (-)
LMOSLCC2376_0552
LMOSLCC2376_0552
Single gene
DOOR ID:
3910112
LMOSLCC2376_0552
View Structure
5
622919-623019
(-)
SAM
621532-622810 (-)
cysD
LMOSLCC2376_0574
Operon
DOOR ID:
1150819
LMOSLCC2376_0573
(metX)
,
LMOSLCC2376_0574
(cysD)
View Structure
6
743206-743400
(+)
glmS
743485-745291 (+)
glmS
LMOSLCC2376_0706
Single gene
DOOR ID:
3910177
LMOSLCC2376_0706
(glmS)
View Structure
7
804709-804906
(-)
lysine
803158-804619 (-)
lysP
LMOSLCC2376_0766
Single gene
DOOR ID:
3910205
LMOSLCC2376_0766
(lysP)
View Structure
8
852199-852296
(+)
SAM
852353-853493 (+)
LMOSLCC2376_0812
LMOSLCC2376_0812
Single gene
DOOR ID:
3910234
LMOSLCC2376_0812
View Structure
9
875787-875834
(+)
PreQ1
875839-876328 (+)
LMOSLCC2376_0836
LMOSLCC2376_0836
Single gene
DOOR ID:
3910242
LMOSLCC2376_0836
View Structure
10
991097-991200
(+)
yybP-ykoY
991298-992066 (+)
LMOSLCC2376_0963
LMOSLCC2376_0963
Single gene
DOOR ID:
3910275
LMOSLCC2376_0963
View Structure
11
1126939-1127128
(+)
cobalamin
1127281-1128166 (-)
pocR
LMOSLCC2376_1101
Single gene
DOOR ID:
3910326
LMOSLCC2376_1101
(pocR)
View Structure
12
1145208-1145351
(+)
cobalamin
1145768-1146908 (+)
LMOSLCC2376_1123
LMOSLCC2376_1123
Single gene
DOOR ID:
3910328
LMOSLCC2376_1123
View Structure
13
1161952-1162129
(+)
cobalamin
1162290-1163649 (+)
cobB
LMOSLCC2376_1142
Operon
DOOR ID:
1150931
LMOSLCC2376_1142
(cobB)
,
LMOSLCC2376_1143
(cobD)
,
LMOSLCC2376_1144
(cobH)
,
LMOSLCC2376_1145
(cbiD)
,
LMOSLCC2376_1146
(cbiE)
,
LMOSLCC2376_1147
(cbiT)
,
LMOSLCC2376_1148
(cbiF)
,
LMOSLCC2376_1149
(cbiG)
,
LMOSLCC2376_1150
(cbiH)
,
LMOSLCC2376_1151
(cbiJ)
,
LMOSLCC2376_1152
(cobA)
,
LMOSLCC2376_1153
(cbiK)
,
LMOSLCC2376_1154
(cbiL)
,
LMOSLCC2376_1155
(cbiM)
,
LMOSLCC2376_1156
(cbiN)
,
LMOSLCC2376_1157
(cbiQ)
,
LMOSLCC2376_1158
(cbiO-1)
,
LMOSLCC2376_1159
(cobQ)
,
LMOSLCC2376_1160
View Structure
14
1320828-1320919
(+)
glycine
1321002-1322091 (+)
gcvT
LMOSLCC2376_1302
Operon
DOOR ID:
1150964
LMOSLCC2376_1302
(gcvT)
,
LMOSLCC2376_1303
(gcvP1)
,
LMOSLCC2376_1304
(gcvP2)
View Structure
15
1409891-1410001
(-)
TPP
1409262-1409823 (-)
LMOSLCC2376_1385
LMOSLCC2376_1385
Single gene
DOOR ID:
3910404
LMOSLCC2376_1385
View Structure
16
1663582-1663690
(-)
SAM
1662274-1663474 (-)
metK
LMOSLCC2376_1624
Single gene
DOOR ID:
3910474
LMOSLCC2376_1624
(metK)
View Structure
17
1681294-1681400
(-)
SAM
1678889-1681187 (-)
metE
LMOSLCC2376_1640
Operon
DOOR ID:
1151045
LMOSLCC2376_1637,
LMOSLCC2376_1638
(metC-1)
,
LMOSLCC2376_1639
(metC-2)
,
LMOSLCC2376_1640
(metE)
View Structure
18
1900546-1900646
(-)
purine
1899885-1900464 (-)
xpt
LMOSLCC2376_1846
Operon
DOOR ID:
1151087
LMOSLCC2376_1845
(pbuX)
,
LMOSLCC2376_1846
(xpt)
View Structure
19
1962215-1962337
(-)
FMN
1961413-1962025 (-)
LMOSLCC2376_1907
LMOSLCC2376_1907
Single gene
DOOR ID:
3910555
LMOSLCC2376_1907
View Structure
20
2385650-2385768
(-)
SAM
2384537-2385560 (-)
metN
LMOSLCC2376_2311
Operon
DOOR ID:
1151190
LMOSLCC2376_2309,
LMOSLCC2376_2310
(metI)
,
LMOSLCC2376_2311
(metN)
View Structure
21
2661597-2661763
(-)
ykoK
2658741-2661312 (-)
mgtA
LMOSLCC2376_2584
Operon
DOOR ID:
1151251
LMOSLCC2376_2582,
LMOSLCC2376_2583
(ftsW)
,
LMOSLCC2376_2584
(mgtA)
View Structure
Genome:
Listeria monocytogenes SLCC2376
(
NC_018590.1
);
Phylum:
Firmicutes
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SLCC2376";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1161952-1162129";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1162290-1163649";i:10;s:1:"+";i:11;s:4:"cobB";i:12;s:0:"";i:13;s:16:"LMOSLCC2376_1142";i:14;s:6:"Operon";i:15;s:7:"1150931";i:16;s:432:"LMOSLCC2376_1142(cobB);LMOSLCC2376_1143(cobD);LMOSLCC2376_1144(cobH);LMOSLCC2376_1145(cbiD);LMOSLCC2376_1146(cbiE);LMOSLCC2376_1147(cbiT);LMOSLCC2376_1148(cbiF);LMOSLCC2376_1149(cbiG);LMOSLCC2376_1150(cbiH);LMOSLCC2376_1151(cbiJ);LMOSLCC2376_1152(cobA);LMOSLCC2376_1153(cbiK);LMOSLCC2376_1154(cbiL);LMOSLCC2376_1155(cbiM);LMOSLCC2376_1156(cbiN);LMOSLCC2376_1157(cbiQ);LMOSLCC2376_1158(cbiO-1);LMOSLCC2376_1159(cobQ);LMOSLCC2376_1160";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_018590.1";i:2;s:31:"Listeria monocytogenes 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