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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
137133-137235
(+)
SAM
137322-138897 (+)
LMOSLCC2479_0134
LMOSLCC2479_0134
Single gene
DOOR ID:
3908880
LMOSLCC2479_0134
View Structure
2
309251-309370
(-)
SAM
308318-309140 (-)
LMOSLCC2479_0286
LMOSLCC2479_0286
Operon
DOOR ID:
1150151
LMOSLCC2479_0282,
LMOSLCC2479_0283,
LMOSLCC2479_0284,
LMOSLCC2479_0285,
LMOSLCC2479_0286
View Structure
3
340071-340176
(+)
TPP
340262-340937 (+)
LMOSLCC2479_0316
LMOSLCC2479_0316
Operon
DOOR ID:
1150157
LMOSLCC2479_0316,
LMOSLCC2479_0317
(thiM)
,
LMOSLCC2479_0318
(thiD-1)
,
LMOSLCC2479_0319
(thiE)
View Structure
4
609750-609851
(-)
purine
608360-609656 (-)
LMOSLCC2479_0580
LMOSLCC2479_0580
Single gene
DOOR ID:
3909078
LMOSLCC2479_0580
View Structure
5
636564-636664
(-)
SAM
635177-636455 (-)
cysD
LMOSLCC2479_0602
Operon
DOOR ID:
1150208
LMOSLCC2479_0601
(metX)
,
LMOSLCC2479_0602
(cysD)
View Structure
6
755088-755282
(+)
glmS
755367-757173 (+)
glmS
LMOSLCC2479_0736
Single gene
DOOR ID:
3909135
LMOSLCC2479_0736
(glmS)
View Structure
7
825115-825312
(-)
lysine
823564-825025 (-)
lysP
LMOSLCC2479_0806
Single gene
DOOR ID:
3909168
LMOSLCC2479_0806
(lysP)
View Structure
8
881417-881514
(+)
SAM
881608-882712 (+)
LMOSLCC2479_0853
LMOSLCC2479_0853
Single gene
DOOR ID:
3909196
LMOSLCC2479_0853
View Structure
9
906573-906620
(+)
PreQ1
906625-907114 (+)
LMOSLCC2479_0877
LMOSLCC2479_0877
Single gene
DOOR ID:
3909203
LMOSLCC2479_0877
View Structure
10
1020011-1020114
(+)
yybP-ykoY
1020212-1020980 (+)
LMOSLCC2479_1004
LMOSLCC2479_1004
Single gene
DOOR ID:
3909236
LMOSLCC2479_1004
View Structure
11
1157054-1157244
(+)
cobalamin
1157396-1158281 (-)
pocR
LMOSLCC2479_1146
Single gene
DOOR ID:
3909281
LMOSLCC2479_1146
(pocR)
View Structure
12
1175321-1175464
(+)
cobalamin
1175881-1177021 (+)
LMOSLCC2479_1168
LMOSLCC2479_1168
Single gene
DOOR ID:
3909283
LMOSLCC2479_1168
View Structure
13
1193725-1193902
(+)
cobalamin
1194063-1195422 (+)
cobB
LMOSLCC2479_1189
Operon
DOOR ID:
1150326
LMOSLCC2479_1189
(cobB)
,
LMOSLCC2479_1190
(cobD)
,
LMOSLCC2479_1191
(cobH)
,
LMOSLCC2479_1192
(cbiD)
,
LMOSLCC2479_1193
(cbiE)
,
LMOSLCC2479_1194
(cbiT)
,
LMOSLCC2479_1195
(cbiF)
View Structure
14
1392882-1392973
(+)
glycine
1393056-1394145 (+)
gcvT
LMOSLCC2479_1408
Operon
DOOR ID:
1150370
LMOSLCC2479_1408
(gcvT)
,
LMOSLCC2479_1409
(gcvP1)
,
LMOSLCC2479_1410
(gcvP2)
View Structure
15
1481205-1481315
(-)
TPP
1480575-1481136 (-)
LMOSLCC2479_1489
LMOSLCC2479_1489
Single gene
DOOR ID:
3909370
LMOSLCC2479_1489
View Structure
16
1736583-1736691
(-)
SAM
1735275-1736475 (-)
metK
LMOSLCC2479_1727
Single gene
DOOR ID:
3909438
LMOSLCC2479_1727
(metK)
View Structure
17
1759531-1759637
(-)
SAM
1757126-1759424 (-)
metE
LMOSLCC2479_1744
Operon
DOOR ID:
1150449
LMOSLCC2479_1741,
LMOSLCC2479_1742
(metC-1)
,
LMOSLCC2479_1743
(metC-2)
,
LMOSLCC2479_1744
(metE)
View Structure
18
1978710-1978810
(-)
purine
1978049-1978628 (-)
xpt
LMOSLCC2479_1948
Operon
DOOR ID:
1150490
LMOSLCC2479_1947
(pbuX)
,
LMOSLCC2479_1948
(xpt)
View Structure
19
2040375-2040497
(-)
FMN
2039573-2040185 (-)
LMOSLCC2479_2008
LMOSLCC2479_2008
Single gene
DOOR ID:
3909517
LMOSLCC2479_2008
View Structure
20
2508196-2508314
(-)
SAM
2507083-2508106 (-)
metN
LMOSLCC2479_2481
Operon
DOOR ID:
1150605
LMOSLCC2479_2479,
LMOSLCC2479_2480
(metI)
,
LMOSLCC2479_2481
(metN)
View Structure
21
2793582-2793748
(-)
ykoK
2790725-2793296 (-)
mgtA
LMOSLCC2479_2766
Operon
DOOR ID:
1150671
LMOSLCC2479_2764,
LMOSLCC2479_2765
(ftsW)
,
LMOSLCC2479_2766
(mgtA)
View Structure
Genome:
Listeria monocytogenes SLCC2479
(
NC_018589.1
);
Phylum:
Firmicutes
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