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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
149415-149517
(+)
SAM
149603-151178 (+)
LMOSLCC2378_0153
LMOSLCC2378_0153
Single gene
DOOR ID:
3906752
LMOSLCC2378_0153
View Structure
2
326214-326333
(-)
SAM
325283-326105 (-)
LMOSLCC2378_0307
LMOSLCC2378_0307
Operon
DOOR ID:
1148952
LMOSLCC2378_0303,
LMOSLCC2378_0304,
LMOSLCC2378_0305,
LMOSLCC2378_0306,
LMOSLCC2378_0307
View Structure
3
353626-353731
(+)
TPP
353817-354492 (+)
LMOSLCC2378_0332
LMOSLCC2378_0332
Operon
DOOR ID:
1148956
LMOSLCC2378_0332,
LMOSLCC2378_0333
(thiM)
,
LMOSLCC2378_0334
(thiD-1)
,
LMOSLCC2378_0335
(thiE)
View Structure
4
618152-618253
(-)
purine
616762-618058 (-)
LMOSLCC2378_0597
LMOSLCC2378_0597
Single gene
DOOR ID:
3906959
LMOSLCC2378_0597
View Structure
5
644951-645051
(-)
SAM
643564-644842 (-)
cysD
LMOSLCC2378_0619
Operon
DOOR ID:
1149002
LMOSLCC2378_0618
(metX)
,
LMOSLCC2378_0619
(cysD)
View Structure
6
771475-771670
(+)
glmS
771755-773561 (+)
glmS
LMOSLCC2378_0758
Single gene
DOOR ID:
3907018
LMOSLCC2378_0758
(glmS)
View Structure
7
828393-828590
(-)
lysine
826842-828303 (-)
lysP
LMOSLCC2378_0812
Single gene
DOOR ID:
3907047
LMOSLCC2378_0812
(lysP)
View Structure
8
883244-883341
(+)
SAM
883435-884539 (+)
LMOSLCC2378_0859
LMOSLCC2378_0859
Single gene
DOOR ID:
3907075
LMOSLCC2378_0859
View Structure
9
908382-908429
(+)
PreQ1
908434-908923 (+)
LMOSLCC2378_0882
LMOSLCC2378_0882
Single gene
DOOR ID:
3907082
LMOSLCC2378_0882
View Structure
10
1022628-1022731
(+)
yybP-ykoY
1022829-1023597 (+)
LMOSLCC2378_1009
LMOSLCC2378_1009
Single gene
DOOR ID:
3907113
LMOSLCC2378_1009
View Structure
11
1159145-1159335
(+)
cobalamin
1159488-1160373 (-)
pocR
LMOSLCC2378_1153
Single gene
DOOR ID:
3907161
LMOSLCC2378_1153
(pocR)
View Structure
12
1177416-1177559
(+)
cobalamin
1177976-1179116 (+)
LMOSLCC2378_1177
LMOSLCC2378_1177
Single gene
DOOR ID:
3907164
LMOSLCC2378_1177
View Structure
13
1194163-1194340
(+)
cobalamin
1194501-1195860 (+)
cobB
LMOSLCC2378_1197
Operon
DOOR ID:
1149118
LMOSLCC2378_1197
(cobB)
,
LMOSLCC2378_1198
(cobD)
,
LMOSLCC2378_1199
(cobH)
,
LMOSLCC2378_1200
(cbiD)
,
LMOSLCC2378_1201
(cbiE)
,
LMOSLCC2378_1202
(cbiT)
,
LMOSLCC2378_1203
(cbiF)
View Structure
14
1353547-1353638
(+)
glycine
1353721-1354810 (+)
gcvT
LMOSLCC2378_1361
Operon
DOOR ID:
1149152
LMOSLCC2378_1361
(gcvT)
,
LMOSLCC2378_1362
(gcvP1)
,
LMOSLCC2378_1363
(gcvP2)
View Structure
15
1441866-1441976
(-)
TPP
1441237-1441798 (-)
LMOSLCC2378_1445
LMOSLCC2378_1445
Single gene
DOOR ID:
3907243
LMOSLCC2378_1445
View Structure
16
1698459-1698567
(-)
SAM
1697152-1698391 (-)
metK
LMOSLCC2378_1685
Single gene
DOOR ID:
3907314
LMOSLCC2378_1685
(metK)
View Structure
17
1721405-1721511
(-)
SAM
1719000-1721298 (-)
metE
LMOSLCC2378_1702
Operon
DOOR ID:
1149233
LMOSLCC2378_1699,
LMOSLCC2378_1700
(metC-1)
,
LMOSLCC2378_1701
(metC-2)
,
LMOSLCC2378_1702
(metE)
View Structure
18
1940827-1940927
(-)
purine
1938852-1940160 (-)
pbuX
LMOSLCC2378_1907
Operon
DOOR ID:
1149274
LMOSLCC2378_1907
(pbuX)
,
LMOSLCC2378_1908
(xpt)
View Structure
19
2008804-2008926
(-)
FMN
2008002-2008614 (-)
LMOSLCC2378_1968
LMOSLCC2378_1968
Single gene
DOOR ID:
3907399
LMOSLCC2378_1968
View Structure
20
2481277-2481395
(-)
SAM
2480164-2481187 (-)
metN
LMOSLCC2378_2421
Operon
DOOR ID:
1149387
LMOSLCC2378_2419,
LMOSLCC2378_2420
(metI)
,
LMOSLCC2378_2421
(metN)
View Structure
21
2754290-2754456
(-)
ykoK
2751434-2754005 (-)
mgtA
LMOSLCC2378_2697
Operon
DOOR ID:
1149448
LMOSLCC2378_2695,
LMOSLCC2378_2696
(ftsW)
,
LMOSLCC2378_2697
(mgtA)
View Structure
Genome:
Listeria monocytogenes SLCC2378
(
NC_018585.1
);
Phylum:
Firmicutes
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