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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
147230-147332
(+)
SAM
147418-148993 (+)
LMOATCC19117_0151
LMOATCC19117_0151
Single gene
DOOR ID:
3905701
LMOATCC19117_0151
View Structure
2
323716-323835
(-)
SAM
322785-323607 (-)
LMOATCC19117_0303
LMOATCC19117_0303
Operon
DOOR ID:
1148342
LMOATCC19117_0299,
LMOATCC19117_0300,
LMOATCC19117_0301,
LMOATCC19117_0302,
LMOATCC19117_0303
View Structure
3
358223-358328
(+)
TPP
358414-359089 (+)
LMOATCC19117_0331
LMOATCC19117_0331
Operon
DOOR ID:
1148348
LMOATCC19117_0331,
LMOATCC19117_0332
(thiM)
,
LMOATCC19117_0333
(thiD-1)
,
LMOATCC19117_0334
(thiE)
View Structure
4
632542-632643
(-)
purine
631152-632448 (-)
LMOATCC19117_0603
LMOATCC19117_0603
Single gene
DOOR ID:
3905901
LMOATCC19117_0603
View Structure
5
659342-659442
(-)
SAM
657955-659233 (-)
cysD
LMOATCC19117_0625
Operon
DOOR ID:
1148398
LMOATCC19117_0624
(metX)
,
LMOATCC19117_0625
(cysD)
View Structure
6
783228-783423
(+)
glmS
783508-785314 (+)
glmS
LMOATCC19117_0762
Single gene
DOOR ID:
3905960
LMOATCC19117_0762
(glmS)
View Structure
7
841701-841898
(-)
lysine
840150-841611 (-)
lysP
LMOATCC19117_0816
Single gene
DOOR ID:
3905989
LMOATCC19117_0816
(lysP)
View Structure
8
896550-896647
(+)
SAM
896741-897845 (+)
LMOATCC19117_0863
LMOATCC19117_0863
Single gene
DOOR ID:
3906017
LMOATCC19117_0863
View Structure
9
921687-921734
(+)
PreQ1
921739-922228 (+)
LMOATCC19117_0886
LMOATCC19117_0886
Single gene
DOOR ID:
3906024
LMOATCC19117_0886
View Structure
10
1037483-1037586
(+)
yybP-ykoY
1037684-1038452 (+)
LMOATCC19117_1013
LMOATCC19117_1013
Single gene
DOOR ID:
3906057
LMOATCC19117_1013
View Structure
11
1170027-1170217
(+)
cobalamin
1170370-1171255 (-)
pocR
LMOATCC19117_1149
Single gene
DOOR ID:
3906100
LMOATCC19117_1149
(pocR)
View Structure
12
1188297-1188440
(+)
cobalamin
1188857-1189997 (+)
LMOATCC19117_1172
LMOATCC19117_1172
Single gene
DOOR ID:
3906103
LMOATCC19117_1172
View Structure
13
1205043-1205220
(+)
cobalamin
1205381-1206740 (+)
cobB
LMOATCC19117_1191
Operon
DOOR ID:
1148513
LMOATCC19117_1191
(cobB)
,
LMOATCC19117_1192
(cobD)
,
LMOATCC19117_1193
(cobH)
,
LMOATCC19117_1194
(cbiD)
,
LMOATCC19117_1195
(cbiE)
,
LMOATCC19117_1196
(cbiT)
,
LMOATCC19117_1197
(cbiF)
View Structure
14
1364855-1364946
(+)
glycine
1365029-1366118 (+)
gcvT
LMOATCC19117_1355
Operon
DOOR ID:
1148546
LMOATCC19117_1355
(gcvT)
,
LMOATCC19117_1356
(gcvP1)
,
LMOATCC19117_1357
(gcvP2)
View Structure
15
1453164-1453274
(-)
TPP
1452535-1453096 (-)
LMOATCC19117_1438
LMOATCC19117_1438
Single gene
DOOR ID:
3906185
LMOATCC19117_1438
View Structure
16
1709764-1709872
(-)
SAM
1708457-1709696 (-)
metK
LMOATCC19117_1679
Single gene
DOOR ID:
3906252
LMOATCC19117_1679
(metK)
View Structure
17
1732728-1732834
(-)
SAM
1730323-1732621 (-)
metE
LMOATCC19117_1696
Single gene
DOOR ID:
3906259
LMOATCC19117_1696
(metE)
View Structure
18
1952141-1952241
(-)
purine
1951480-1952059 (-)
xpt
LMOATCC19117_1903
Operon
DOOR ID:
1148670
LMOATCC19117_1902
(pbuX)
,
LMOATCC19117_1903
(xpt)
View Structure
19
2020102-2020224
(-)
FMN
2019300-2019912 (-)
LMOATCC19117_1963
LMOATCC19117_1963
Single gene
DOOR ID:
3906339
LMOATCC19117_1963
View Structure
20
2505042-2505160
(-)
SAM
2503929-2504952 (-)
metN
LMOATCC19117_2426
Operon
DOOR ID:
1148786
LMOATCC19117_2424,
LMOATCC19117_2425
(metI)
,
LMOATCC19117_2426
(metN)
View Structure
21
2774992-2775158
(-)
ykoK
2772136-2774707 (-)
mgtA
LMOATCC19117_2698
Operon
DOOR ID:
1148846
LMOATCC19117_2696,
LMOATCC19117_2697
(ftsW)
,
LMOATCC19117_2698
(mgtA)
View Structure
Genome:
Listeria monocytogenes ATCC 19117
(
NC_018584.1
);
Phylum:
Firmicutes
a:22:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"147230-147332";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"147418-148993";i:10;s:1:"+";i:11;s:17:"LMOATCC19117_0151";i:12;s:0:"";i:13;s:17:"LMOATCC19117_0151";i:14;s:11:"Single gene";i:15;s:7:"3905701";i:16;s:17:"LMOATCC19117_0151";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"323716-323835";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"322785-323607";i:10;s:1:"-";i:11;s:17:"LMOATCC19117_0303";i:12;s:0:"";i:13;s:17:"LMOATCC19117_0303";i:14;s:6:"Operon";i:15;s:7:"1148342";i:16;s:89:"LMOATCC19117_0299;LMOATCC19117_0300;LMOATCC19117_0301;LMOATCC19117_0302;LMOATCC19117_0303";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"358223-358328";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"358414-359089";i:10;s:1:"+";i:11;s:17:"LMOATCC19117_0331";i:12;s:0:"";i:13;s:17:"LMOATCC19117_0331";i:14;s:6:"Operon";i:15;s:7:"1148348";i:16;s:91:"LMOATCC19117_0331;LMOATCC19117_0332(thiM);LMOATCC19117_0333(thiD-1);LMOATCC19117_0334(thiE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"632542-632643";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"631152-632448";i:10;s:1:"-";i:11;s:17:"LMOATCC19117_0603";i:12;s:0:"";i:13;s:17:"LMOATCC19117_0603";i:14;s:11:"Single gene";i:15;s:7:"3905901";i:16;s:17:"LMOATCC19117_0603";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"659342-659442";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"657955-659233";i:10;s:1:"-";i:11;s:4:"cysD";i:12;s:0:"";i:13;s:17:"LMOATCC19117_0625";i:14;s:6:"Operon";i:15;s:7:"1148398";i:16;s:47:"LMOATCC19117_0624(metX);LMOATCC19117_0625(cysD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"783228-783423";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"783508-785314";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:17:"LMOATCC19117_0762";i:14;s:11:"Single gene";i:15;s:7:"3905960";i:16;s:23:"LMOATCC19117_0762(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"841701-841898";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"840150-841611";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:17:"LMOATCC19117_0816";i:14;s:11:"Single gene";i:15;s:7:"3905989";i:16;s:23:"LMOATCC19117_0816(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"896550-896647";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"896741-897845";i:10;s:1:"+";i:11;s:17:"LMOATCC19117_0863";i:12;s:0:"";i:13;s:17:"LMOATCC19117_0863";i:14;s:11:"Single gene";i:15;s:7:"3906017";i:16;s:17:"LMOATCC19117_0863";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"921687-921734";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"921739-922228";i:10;s:1:"+";i:11;s:17:"LMOATCC19117_0886";i:12;s:0:"";i:13;s:17:"LMOATCC19117_0886";i:14;s:11:"Single gene";i:15;s:7:"3906024";i:16;s:17:"LMOATCC19117_0886";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1037483-1037586";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1037684-1038452";i:10;s:1:"+";i:11;s:17:"LMOATCC19117_1013";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1013";i:14;s:11:"Single gene";i:15;s:7:"3906057";i:16;s:17:"LMOATCC19117_1013";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1170027-1170217";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1170370-1171255";i:10;s:1:"-";i:11;s:4:"pocR";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1149";i:14;s:11:"Single gene";i:15;s:7:"3906100";i:16;s:23:"LMOATCC19117_1149(pocR)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1188297-1188440";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1188857-1189997";i:10;s:1:"+";i:11;s:17:"LMOATCC19117_1172";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1172";i:14;s:11:"Single gene";i:15;s:7:"3906103";i:16;s:17:"LMOATCC19117_1172";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1205043-1205220";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1205381-1206740";i:10;s:1:"+";i:11;s:4:"cobB";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1191";i:14;s:6:"Operon";i:15;s:7:"1148513";i:16;s:167:"LMOATCC19117_1191(cobB);LMOATCC19117_1192(cobD);LMOATCC19117_1193(cobH);LMOATCC19117_1194(cbiD);LMOATCC19117_1195(cbiE);LMOATCC19117_1196(cbiT);LMOATCC19117_1197(cbiF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1364855-1364946";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1365029-1366118";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1355";i:14;s:6:"Operon";i:15;s:7:"1148546";i:16;s:73:"LMOATCC19117_1355(gcvT);LMOATCC19117_1356(gcvP1);LMOATCC19117_1357(gcvP2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1453164-1453274";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1452535-1453096";i:10;s:1:"-";i:11;s:17:"LMOATCC19117_1438";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1438";i:14;s:11:"Single gene";i:15;s:7:"3906185";i:16;s:17:"LMOATCC19117_1438";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1709764-1709872";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1708457-1709696";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1679";i:14;s:11:"Single gene";i:15;s:7:"3906252";i:16;s:23:"LMOATCC19117_1679(metK)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1732728-1732834";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1730323-1732621";i:10;s:1:"-";i:11;s:4:"metE";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1696";i:14;s:11:"Single gene";i:15;s:7:"3906259";i:16;s:23:"LMOATCC19117_1696(metE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1952141-1952241";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1951480-1952059";i:10;s:1:"-";i:11;s:3:"xpt";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1903";i:14;s:6:"Operon";i:15;s:7:"1148670";i:16;s:46:"LMOATCC19117_1902(pbuX);LMOATCC19117_1903(xpt)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2020102-2020224";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2019300-2019912";i:10;s:1:"-";i:11;s:17:"LMOATCC19117_1963";i:12;s:0:"";i:13;s:17:"LMOATCC19117_1963";i:14;s:11:"Single gene";i:15;s:7:"3906339";i:16;s:17:"LMOATCC19117_1963";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2505042-2505160";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2503929-2504952";i:10;s:1:"-";i:11;s:4:"metN";i:12;s:0:"";i:13;s:17:"LMOATCC19117_2426";i:14;s:6:"Operon";i:15;s:7:"1148786";i:16;s:65:"LMOATCC19117_2424;LMOATCC19117_2425(metI);LMOATCC19117_2426(metN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_018584.1";i:2;s:33:"Listeria monocytogenes ATCC 19117";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2774992-2775158";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2772136-2774707";i:10;s:1:"-";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:17:"LMOATCC19117_2698";i:14;s:6:"Operon";i:15;s:7:"1148846";i:16;s:65:"LMOATCC19117_2696;LMOATCC19117_2697(ftsW);LMOATCC19117_2698(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}