Genome: Desulfosporosinus meridiei DSM 13257 (NC_018515.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 295947-296077 (+)SAM296321-297518 (+)Desmer_0317

Desmer_0317Operon

DOOR ID: 1299845		Desmer_0319,
Desmer_0318,
Desmer_0317		 View Structure
2 349730-349888 (+)glmS350148-351972 (+)Desmer_0365

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Desmer_0365Single gene

DOOR ID: 3893817		Desmer_0365 View Structure
3 444704-444838 (+)MOCO444950-445652 (+)Desmer_0433

Molybdate ABC transporter; permease protein		Desmer_0433Operon

DOOR ID: 1299865		Desmer_0436,
Desmer_0435,
Desmer_0434,
Desmer_0433		 View Structure
4 448551-448680 (+)MOCO448850-449942 (+)Desmer_0437

Xanthine and CO dehydrogenases maturation factor; XdhC/CoxF family		Desmer_0437Operon

DOOR ID: 1299866		Desmer_0439,
Desmer_0438,
Desmer_0437		 View Structure
5 475994-476100 (-)SAM474632-475925 (-)Desmer_0458

OAH/OAS sulfhydrylase		Desmer_0458Single gene

DOOR ID: 3893845		Desmer_0458 View Structure
6 489566-489670 (-)c-di-GMP-I487836-489366 (-)Desmer_0474

Na+/H+ antiporter		Desmer_0474single gene

DOOR ID: 3893856		Desmer_0474 View Structure
7 491637-491747 (-)c-di-GMP-I489709-491239 (-)Desmer_0475

Na+/H+ antiporter		Desmer_0475single gene

DOOR ID: 3893857		Desmer_0475 View Structure
8 501070-501252 (+)cobalamin501433-502177 (+)Desmer_0489

Methylase involved in ubiquinone/menaquinone biosynthesis		Desmer_0489Single gene

DOOR ID: 3893864		Desmer_0489 View Structure
9 502421-502605 (+)cobalamin502972-503851 (+)Desmer_0490

ABC-type cobalt transport system; permease component CbiQ		Desmer_0490Operon

DOOR ID: 1299874		Desmer_0491,
Desmer_0490		 View Structure
10 510415-510589 (+)cobalamin510811-511858 (+)Desmer_0498

DMT(Drug/metabolite transporter) superfamily permease		Desmer_0498Single gene

DOOR ID: 3893870		Desmer_0498 View Structure
11 516535-516727 (+)cobalamin516933-517800 (+)Desmer_0504

Cobalt ABC transporter; permease protein CbiQ		Desmer_0504Operon

DOOR ID: 1299876		Desmer_0505,
Desmer_0504		 View Structure
12 520950-521147 (+)cobalamin521287-523642 (+)Desmer_0509

Ribonucleoside-triphosphate reductase class III catalytic subunit 		Desmer_0509Operon

DOOR ID: 1299878		Desmer_0510,
Desmer_0509		 View Structure
13 531476-531671 (+)cobalamin531904-533500 (+)Desmer_0515

ABC-type dipeptide transport system; periplasmic component		Desmer_0515Operon

DOOR ID: 1299880		Desmer_0519,
Desmer_0518,
Desmer_0517,
Desmer_0516,
Desmer_0515		 View Structure
14 596001-596190 (+)cobalamin596408-597155 (+)Desmer_0586

Methylase involved in ubiquinone/menaquinone biosynthesis		Desmer_0586Single gene

DOOR ID: 3893895		Desmer_0586 View Structure
15 601426-601606 (+)cobalamin602169-602976 (+)Desmer_0590

Desmer_0590Operon

DOOR ID: 1299891		Desmer_0594,
Desmer_0593,
Desmer_0592,
Desmer_0591,
Desmer_0590		 View Structure
16 601799-601978 (+)cobalamin602169-602976 (+)Desmer_0590

Desmer_0590Operon

DOOR ID: 1299891		Desmer_0594,
Desmer_0593,
Desmer_0592,
Desmer_0591,
Desmer_0590		 View Structure
17 619270-619451 (+)cobalamin619643-620063 (+)Desmer_0598

Desmer_0598Single gene

DOOR ID: 3893900		Desmer_0598 View Structure
18 634842-634972 (-)ydaO-yuaA633437-634688 (-)Desmer_0614

Glutamate 2;3-aminomutase 		Desmer_0614Operon

DOOR ID: 1299895		Desmer_0614,
Desmer_0613		 View Structure
19 677519-677652 (-)ydaO-yuaA676075-677515 (-)Desmer_0655

Cell wall-associated hydrolase; invasion-associated protein		Desmer_0655Single gene

DOOR ID: 3893918		Desmer_0655 View Structure
20 743551-743680 (+)MOCO743755-744727 (+)Desmer_0718

GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)		Desmer_0718Operon

DOOR ID: 1299921		Desmer_0719,
Desmer_0718		 View Structure
21 759515-759616 (+)purine759783-760299 (+)Desmer_0734

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Desmer_0734Operon

DOOR ID: 1299925		Desmer_0736,
Desmer_0735,
Desmer_0734		 View Structure
22 759601-759693 (+)ykkC-yxkD759783-760299 (+)Desmer_0734

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Desmer_0734Operon

DOOR ID: 1299925		Desmer_0736,
Desmer_0735,
Desmer_0734		 View Structure
23 784329-784427 (-)SAM783205-784231 (-)Desmer_0757

Methionine import ATP-binding protein MetN 		Desmer_0757Operon

DOOR ID: 1299929		Desmer_0757,
Desmer_0756,
Desmer_0755		 View Structure
24 870046-870147 (+)purine870567-871731 (+)Desmer_0837

Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase		Desmer_0837Single gene

DOOR ID: 3893994		Desmer_0837 View Structure
25 874265-874351 (-)c-di-GMP-I872120-874154 (-)Desmer_0838

Methyl-accepting chemotaxis protein		Desmer_0838single gene

DOOR ID: 3893995		Desmer_0838 View Structure
26 874642-874743 (+)purine875026-875830 (+)Desmer_0839

Aerobic-type carbon monoxide dehydrogenase; middle subunit CoxM/CutM-like protein		Desmer_0839Operon

DOOR ID: 1299945		Desmer_0841,
Desmer_0840,
Desmer_0839		 View Structure
27 1363881-1363980 (+)purine1364080-1364923 (+)Desmer_1307

Aerobic-type carbon monoxide dehydrogenase; middle subunit CoxM/CutM-like protein		Desmer_1307Operon

DOOR ID: 1300039		Desmer_1310,
Desmer_1309,
Desmer_1308,
Desmer_1307		 View Structure
28 1511847-1512035 (-)cobalamin1509990-1510626 (-)Desmer_1442

Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase (2)		Desmer_1442Operon

DOOR ID: 1300064		Desmer_1443,
Desmer_1442,
Desmer_1441		 View Structure
29 1868858-1868969 (+)TPP1869049-1869853 (+)Desmer_1768

Phosphomethylpyrimidine kinase		Desmer_1768Operon

DOOR ID: 1300119		Desmer_1768,
Desmer_1769,
Desmer_1770,
Desmer_1771		 View Structure
30 1909489-1909587 (+)TPP1909806-1910643 (+)Desmer_1804

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		Desmer_1804Single gene

DOOR ID: 3894356		Desmer_1804 View Structure
31 1909640-1909738 (+)TPP1909806-1910643 (+)Desmer_1804

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		Desmer_1804Single gene

DOOR ID: 3894356		Desmer_1804 View Structure
32 1927610-1927760 (-)FMN1926485-1927463 (-)Desmer_1822

DMT(Drug/metabolite transporter) superfamily permease		Desmer_1822Single gene

DOOR ID: 3894367		Desmer_1822 View Structure
33 1957082-1957184 (+)purine1957333-1959616 (+)Desmer_1860

Aerobic-type carbon monoxide dehydrogenase; large subunit CoxL/CutL-like protein		Desmer_1860Operon

DOOR ID: 1300136		Desmer_1860,
Desmer_1861,
Desmer_1862,
Desmer_1863		 View Structure
34 1963978-1964131 (+)MOCO1964302-1965406 (-)Desmer_1864

ABC-type Fe3+-hydroxamate transport system; periplasmic component		Desmer_1864Single gene

DOOR ID: 3894377		Desmer_1864 View Structure
35 2289766-2289943 (+)cobalamin2290038-2290779 (+)Desmer_2178

Alpha-ribazole kinase 		Desmer_2178Operon

DOOR ID: 1300205		Desmer_2178,
Desmer_2179,
Desmer_2180,
Desmer_2181		 View Structure
36 2299846-2300030 (+)cobalamin2300191-2301442 (+)Desmer_2188

Precorrin-6y C5;15-methyltransferase (Decarboxylating); CbiE subunit;precorrin-6Y C5;15-methyltransferase (Decarboxylating); CbiT subunit (32)		Desmer_2188Operon

DOOR ID: 1300207		Desmer_2188,
Desmer_2189,
Desmer_2190,
Desmer_2191,
Desmer_2192,
Desmer_2193,
Desmer_2194,
Desmer_2195		 View Structure
37 2393459-2393635 (+)lysine2393754-2394630 (+)Desmer_2274

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		Desmer_2274Single gene

DOOR ID: 3894539		Desmer_2274 View Structure
38 2673463-2673576 (+)FMN2673711-2674830 (+)Desmer_2541

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Desmer_2541Operon

DOOR ID: 1300278		Desmer_2541,
Desmer_2542,
Desmer_2543,
Desmer_2544		 View Structure
39 2807352-2807493 (-)ydaO-yuaA2806549-2807344 (-)Desmer_2668

Cell wall-associated hydrolase; invasion-associated protein		Desmer_2668Single gene

DOOR ID: 3894698		Desmer_2668 View Structure
40 2837315-2837417 (+)TPP2837479-2837773 (+)Desmer_2702

Desmer_2702Operon

DOOR ID: 1300311		Desmer_2702,
Desmer_2703,
Desmer_2704,
Desmer_2705		 View Structure
41 2933451-2933564 (-)ykkC-yxkD2932497-2933373 (-)Desmer_2798

Branched-chain-amino-acid aminotransferase (BCAT) (2)		Desmer_2798Operon

DOOR ID: 1300330		Desmer_2795,
Desmer_2796,
Desmer_2797,
Desmer_2798		 View Structure
42 3085600-3085687 (-)c-di-GMP-I3085191-3085491 (-)Desmer_2963

Uncharacterized protein		Desmer_2963single gene

DOOR ID: 3894837		Desmer_2963 View Structure
43 3097683-3097858 (-)lysine3096706-3097597 (-)Desmer_2973

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		Desmer_2973Single gene

DOOR ID: 3894845		Desmer_2973 View Structure
44 3209280-3209362 (-)c-di-GMP-I3208136-3209225 (-)Desmer_3071

Putative domain HDIG-containing protein		Desmer_3071single gene

DOOR ID: 3894886		Desmer_3071 View Structure
45 3263326-3263473 (-)ydaO-yuaA3262629-3263211 (+)Desmer_3119

Desmer_3119Single gene

DOOR ID: 3894903		Desmer_3119 View Structure
46 3275375-3275552 (-)cobalamin3273787-3275161 (-)Desmer_3130

UbiD family decarboxylase		Desmer_3130Single gene

DOOR ID: 3894910		Desmer_3130 View Structure
47 3616000-3616191 (-)cobalamin3614551-3615850 (-)Desmer_3481

Hydroxymethylpyrimidine synthase		Desmer_3481Operon

DOOR ID: 1300447		Desmer_3480,
Desmer_3481		 View Structure
48 3652113-3652212 (-)ykkC-yxkD3651745-3652063 (-)Desmer_3521

Cation/cationic drug transporter		Desmer_3521Single gene

DOOR ID: 3895076		Desmer_3521 View Structure
49 3686459-3686633 (-)cobalamin3684855-3686394 (-)Desmer_3549

ATPase component of various ABC-type transport systems with duplicated ATPase domain		Desmer_3549Operon

DOOR ID: 1300457		Desmer_3547,
Desmer_3548,
Desmer_3549		 View Structure
50 3801563-3801746 (-)cobalamin3800428-3801220 (-)Desmer_3647

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Desmer_3647Operon

DOOR ID: 1300475		Desmer_3643,
Desmer_3644,
Desmer_3645,
Desmer_3646,
Desmer_3647		 View Structure
51 3834449-3834541 (-)glycine3832910-3834290 (-)Desmer_3680

Amino acid carrier protein		Desmer_3680Single gene

DOOR ID: 3895134		Desmer_3680 View Structure
52 3984865-3984970 (-)glycine3983498-3984611 (-)Desmer_3825

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Desmer_3825Single gene

DOOR ID: 3895171		Desmer_3825 View Structure
53 4384726-4384822 (-)ykkC-yxkD4382969-4384565 (-)Desmer_4199

2-isopropylmalate synthase/homocitrate synthase family protein		Desmer_4199Single gene

DOOR ID: 3895279		Desmer_4199 View Structure
54 4632099-4632181 (-)c-di-GMP-I4629894-4631973 (-)Desmer_4411

Methyl-accepting chemotaxis protein		Desmer_4411single gene

DOOR ID: 3895359		Desmer_4411 View Structure
55 4816013-4816178 (+)ykoK4816368-4817667 (+)Desmer_4608

Mg/Co/Ni transporter MgtE with CBS domain		Desmer_4608Operon

DOOR ID: 1300671		Desmer_4608,
Desmer_4609		 View Structure
56 4832216-4832302 (-)c-di-GMP-I4830354-4832124 (-)Desmer_4625

Methyl-accepting chemotaxis protein		Desmer_4625single gene

DOOR ID: 3895422		Desmer_4625 View Structure